Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00206
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    31   0.96 
09_04_0433 - 17512299-17512340,17512832-17512838,17513389-175135...    29   2.9  
01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209...    29   5.1  
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876...    28   9.0  
01_06_0954 - 33322951-33323606,33324213-33325014                       28   9.0  

>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 626  FAKGWFCSQLSCLSSGSAVKVTGQAEKSKSYFLI 525
            F K WFCS+LS L+ G   K+ G     KSY L+
Sbjct: 1408 FNKSWFCSKLS-LTHGILAKLKGVRVLDKSYALM 1440


>09_04_0433 -
           17512299-17512340,17512832-17512838,17513389-17513574,
           17513656-17513819,17514732-17514837,17514922-17515013,
           17515277-17515390,17515399-17515528,17515604-17515765,
           17516460-17516512,17516605-17516697
          Length = 382

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 390 SSEASAV*LLFSS*CEHMEDLTVRNI*NSLTLWTLPWTTRCVSEG 524
           S+EA+A  L F   C+H E  ++ +  + L L T PW  + V+EG
Sbjct: 231 STEAAAGNLNFELQCKHCEKESINS--SLLNLLTYPWIEKRVNEG 273


>01_06_0790 +
           32019972-32020101,32020461-32020657,32020790-32020993,
           32021444-32021645,32021798-32021886,32022567-32022662,
           32022710-32022814,32023516-32023556,32023685-32023777,
           32023853-32023970,32024488-32024578,32024693-32024766,
           32025008-32025187,32025643-32025681
          Length = 552

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 514 THLVVH-GRVQSVNEFQIFRTVRSSICSHYEENSSYTADASE 392
           TH +VH  +VQ  N F++ RT+ S      E+ +  T++  E
Sbjct: 367 THCMVHVKKVQLANRFRVLRTILSQAKIIMEDGAETTSEVGE 408


>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
            13987652-13987774,13987962-13988015,13988352-13988411,
            13988522-13988584,13988790-13988863,13989177-13989261,
            13989376-13989456,13989764-13989856,13990275-13990339,
            13990407-13990482,13990570-13990635,13991094-13991153,
            13991233-13991322,13991755-13991817,13992502-13992625,
            13993031-13993271,13993355-13993624,13993715-13994089,
            13994178-13994381,13994455-13995136,13995231-13995279,
            13995362-13995488,13995564-13996258,13996718-13996965
          Length = 1433

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 307  LLCNSIDLPIHNPTWLSFNGRSKNFNALLRRHR 405
            LL   + +P  +P WL+  GR K FNA L++ R
Sbjct: 1131 LLVGLLFIP-ESPRWLANTGRVKEFNASLQKLR 1162


>01_06_0954 - 33322951-33323606,33324213-33325014
          Length = 485

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 507 RCVSEGDQEIRFRLLRLACNLYXXXXXXXXXXXXEPPFCEMREHGLTCLSEG 662
           RC+++G++ +RF    L+C L             +   C +  HG +   EG
Sbjct: 335 RCLADGNELLRFHGATLSCALGGAAGSSSLCASDKCAVCRIIRHGFSAKKEG 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,952,364
Number of Sequences: 37544
Number of extensions: 415505
Number of successful extensions: 1018
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)