Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00206
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3499| Best HMM Match : HAT (HMM E-Value=4.2)                        29   4.0  
SB_29271| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.2  
SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                 28   9.1  
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)           28   9.1  

>SB_3499| Best HMM Match : HAT (HMM E-Value=4.2)
          Length = 376

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 508 DAYLKAIRKYDFDFSAWPVTFTADPEERQ 594
           + Y+K   KY  + S WP   T D ++RQ
Sbjct: 125 EEYIKTFLKYKQEASGWPAWCTTDADKRQ 153


>SB_29271| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 796

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 481 HFGLSHGRQDAYLKAIRKYDFDFSAWPVTFTADPEE 588
           HF  S   +D YL  + +Y  + +AW      DP +
Sbjct: 257 HFTASSSYRDDYLPHLARYSNNLAAWGAKINGDPND 292


>SB_1519| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 943

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 481 HFGLSHGRQDAYLKAIRKYDFDFSAWPVTFTADPEE 588
           HF  S   +D YL  + +Y  + +AW      DP +
Sbjct: 42  HFTASSSYRDDYLPHLARYSNNLAAWGAKINDDPND 77


>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
          Length = 1396

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 508  DAYLKAIRKYDFDFSAWPVTFTADPEERQ 594
            + Y+K   KY  + S WP   T + ++RQ
Sbjct: 1103 EGYIKTFLKYKQEASGWPAWCTTEADKRQ 1131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,278,960
Number of Sequences: 59808
Number of extensions: 488390
Number of successful extensions: 1089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)