Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00206
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical p...    31   0.86 
Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>U00032-12|AAA50629.1|  482|Caenorhabditis elegans Hypothetical
           protein F37A4.1 protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = +1

Query: 523 AIRKYDFDFSAWPVTFTADPEERQESWLQNHPFAKCANMDLPVYQRVIIQILAFIAAHTF 702
           A++KYDF+       F A P    + W      A+           V+ + LA  A H F
Sbjct: 118 ALKKYDFELLDVIPDFVARPNS--DLWHLKPEVAEAG---------VVTRGLASWAIHAF 166

Query: 703 GIRLIYPGSLFLI 741
           G  LIYPGS+ L+
Sbjct: 167 GRHLIYPGSMALL 179


>Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical
           protein R13.4 protein.
          Length = 803

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 490 LSHGRQDAYLKAIRKYDFDFSAWPVTFTADPEERQESWL 606
           L+H   D +LK   + D  FS WPVT + DP  + E ++
Sbjct: 360 LTHDASD-FLKVSPQTDVLFSIWPVTKSNDPNIQYEVYI 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,196,962
Number of Sequences: 27780
Number of extensions: 363360
Number of successful extensions: 958
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)