Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00206
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19260.1 68418.m02293 expressed protein various predicted pro...    29   4.3  
At2g07981.1 68415.m01008 hypothetical protein                          28   5.7  
At1g14950.1 68414.m01786 major latex protein-related / MLP-relat...    28   7.5  
At3g09150.1 68416.m01076 phytochromobilin:ferredoxin oxidoreduct...    27   9.9  
At3g05050.1 68416.m00548 protein kinase family protein contains ...    27   9.9  

>At5g19260.1 68418.m02293 expressed protein various predicted
           proteins
          Length = 288

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 623 AKGWFCSQLSCLSSGSA--VKVTGQAEKSKSYFLIAFRYASCR 501
           + GW  S L  LSSGS+   K T  +EK  SY++   R +SCR
Sbjct: 68  SSGW--SSLQSLSSGSSSSTKTTTSSEKESSYYV--QRPSSCR 106


>At2g07981.1 68415.m01008 hypothetical protein
          Length = 413

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/93 (26%), Positives = 42/93 (45%)
 Frame = -2

Query: 624 RKRVVLQPAFLPFFGISGKGYRPSGEVEIVFPDRLQIRILSSMGESKVSMNFKYFGL*DL 445
           +K+V  +P     FG + K  R   +V +VF        L S  + K  M+F Y      
Sbjct: 189 KKKVDTKPKTHMDFGYTMKALRSKKKVGLVFWSEYD---LMSYTKPKTHMDFGY-----T 240

Query: 444 PYARITKKTVAIQPMPPKKRIKVFTSSIERKPR 346
             A  +KK V ++P P  K +++ +   + KP+
Sbjct: 241 MKALRSKKKVELKPQPDLKGVRIESLLEDTKPK 273


>At1g14950.1 68414.m01786 major latex protein-related / MLP-related
           low similarity to major latex protein {Papaver
           somniferum}[GI:294060] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 155

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 404 GCIATV-FFVMRAYGRSYSP-KYLKFIDTLDSPMDD 505
           GC+  V  F  + Y  S  P KY+KF+ +L + MDD
Sbjct: 111 GCVCKVTMFWEKRYEDSPEPIKYMKFVTSLAADMDD 146


>At3g09150.1 68416.m01076 phytochromobilin:ferredoxin
           oxidoreductase, chloroplast / phytochromobilin synthase
           (HY2) identical to SP|Q9SR43 Phytochromobilin:ferredoxin
           oxidoreductase, chloroplast precursor (EC 1.3.7.4)
           (Phytochromobilin synthase) (PFB synthase) (PPhiB
           synthase) {Arabidopsis thaliana}; identical to cDNA for
           phytochromobilin synthase HY2 protein, GI:13359272
          Length = 327

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -2

Query: 624 RKRVVLQPAFLPFFGISGKGYRPSGEVEIVFPDRLQIRILSSMG-ESKVSMNFKYFGL*D 448
           RKR+VL+P+ L +  ++G   +   E++++     +IR+L SM  E++    F + G  +
Sbjct: 63  RKRIVLEPSHLQYSSMTGLDGKT--ELQMLAFKSSKIRLLRSMAIENETMQVFDFAGFME 120

Query: 447 LPY 439
             Y
Sbjct: 121 PEY 123


>At3g05050.1 68416.m00548 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 593

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
 Frame = +1

Query: 382 NALLRRHRLYSYCFLRNASIWKILQSEIFEIH*HFGLSHGRQDAYLKAIRKYDFDFSAWP 561
           N + + HR+Y  C   +   WK ++      H H    H     Y + IR+   DFS   
Sbjct: 343 NEVEQLHRIYKLCGSPSEEYWKKIRLPSTHKHAH----HKPLPQYKRRIREVYKDFSPEA 398

Query: 562 VT-----FTADPEERQ-------ESWLQNHPFAKCANMDLPVY 654
           ++        DP ERQ         +    P A C   DLP Y
Sbjct: 399 LSLLDTLLALDPAERQTATDVLMSDFFTTEPLA-CQPSDLPKY 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,316,981
Number of Sequences: 28952
Number of extensions: 344788
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)