Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00205
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 148 3e-37
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 148 3e-37
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 148 3e-37
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 84 5e-18
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 78 4e-16
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 37 7e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.002
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.002
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.007
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 31 0.047
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 27 1.0
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 1.3
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 1.3
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 1.8
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 26 1.8
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 2.3
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 3.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 3.1
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 3.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.1
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 5.4
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 5.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 24 7.1
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 7.1
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 24 7.1
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 23 9.4
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 23 9.4
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 23 9.4
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 23 9.4
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 148 bits (358), Expect = 3e-37
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 54.8 bits (126), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIK 334
IALWKFET KY VT+IDAPGHRDFIK
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIK 100
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 148 bits (358), Expect = 3e-37
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 54.8 bits (126), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIK 334
IALWKFET KY VT+IDAPGHRDFIK
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIK 100
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 148 bits (358), Expect = 3e-37
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 54.8 bits (126), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIK 334
IALWKFET KY VT+IDAPGHRDFIK
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIK 100
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 84.2 bits (199), Expect = 5e-18
Identities = 37/69 (53%), Positives = 50/69 (72%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 227
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 228 AERELGITI 254
ERE G T+
Sbjct: 296 EEREKGKTV 304
Score = 25.4 bits (53), Expect = 2.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFI 331
FET +++DAPGH+ ++
Sbjct: 311 FETEHRRFSLLDAPGHKGYV 330
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 77.8 bits (183), Expect = 4e-16
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 227
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 228 AERELGITIILLS 266
ER G+T+ + S
Sbjct: 235 EERARGVTMDVAS 247
Score = 30.7 bits (66), Expect = 0.062
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFI 331
+A FE+ K I DAPGHRDFI
Sbjct: 245 VASTTFESDKKIYEIGDAPGHRDFI 269
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 37.1 bits (82), Expect = 7e-04
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 221
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 222 LKAERELGITI 254
E+ GITI
Sbjct: 94 APEEKARGITI 104
Score = 27.5 bits (58), Expect = 0.58
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIK 334
++ET+ + +D PGH D+IK
Sbjct: 110 EYETANRHYAHVDCPGHADYIK 131
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.002
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 23.8 bits (49), Expect = 7.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 287 YYVTIIDAPGHRDF 328
+ V +ID+PGH DF
Sbjct: 98 FLVNLIDSPGHVDF 111
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.002
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 23.8 bits (49), Expect = 7.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 287 YYVTIIDAPGHRDF 328
+ V +ID+PGH DF
Sbjct: 98 FLVNLIDSPGHVDF 111
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.9 bits (74), Expect = 0.007
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 240 LGITI 254
GITI
Sbjct: 111 KGITI 115
Score = 26.2 bits (55), Expect = 1.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDF 328
FE S Y + IID PGH DF
Sbjct: 141 FEKS-YNINIIDTPGHIDF 158
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 31.1 bits (67), Expect = 0.047
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 240 LGITI 254
GITI
Sbjct: 77 RGITI 81
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 26.6 bits (56), Expect = 1.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 216 DKLKAERELGITIILLSGSSKLASTMLPS 302
D +KA RELG+ ++ G L ++ +PS
Sbjct: 66 DMIKAARELGLNAYVIPGEKLLDASEIPS 94
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 1.3
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -2
Query: 310 SINDGNIVLASFELPESNMIVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 131
S++ + L S+ P S + + A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 1.3
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 240 LGITI 254
GIT+
Sbjct: 104 RGITV 108
Score = 25.0 bits (52), Expect = 3.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 263 LWKFETSKYYVTIIDAPGHRDF 328
++ + Y + +ID PGH DF
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDF 137
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 334 LDEISVSRSINDGNIVLASFELPESNMIVIPSSRSAFS 221
+D+ SV R +N + + ELPE + + R AFS
Sbjct: 609 IDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFS 646
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 331 DEISVSRSINDGNIVLASFELPESNMIVIPSSRSAFSLSN 212
D + SIN N++ A + +P + +PSS +F L N
Sbjct: 89 DTLQELMSINSINMLYAFYYMPSGDEEKLPSSWKSFLLEN 128
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 2.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 222 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 94
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 30 PKMGKEKTHINIVVIGHVDSGKST 101
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 3.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 177 PGPPSRTSRWYVCQYHHIC 121
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 3.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 287 YYVTIIDAPGHRDF 328
Y + +ID+PGH DF
Sbjct: 94 YLINLIDSPGHVDF 107
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR 146
N ++ HVD GK+T L+ G I +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSK 49
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 4.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 283 ASFELPESNMIVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSI 134
A+ +LP S P+S S + L DP +S A + + V +SI
Sbjct: 110 ATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTSVEVSI 159
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 63 IVVIGHVDSGKSTTTGHLIYKC 128
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 5.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 66 VVIGHVDSGKSTTTGHLIYKCG 131
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 23.8 bits (49), Expect = 7.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 161
K T +I+ I + DSGK+ T +Y+ G I +F
Sbjct: 1379 KVTTSASIIAILNNDSGKTVTVKGTVYRDGKEVIEVISRF 1418
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 7.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 63 IVVIGHVDSGKSTTTGHLIYKCG 131
++V+G SGK+T +Y+ G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 7.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 72 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 203
I HV G+ L + GG RTIE E E + KG++ +
Sbjct: 297 IAHVRDGE-LHVHRLRREGGGSTTRTIETLEMEIASVMKGNYDH 339
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 186 YPFPGPPSRTSRWYVCQYHHICRSSDQW 103
YP PPS ++ H IC S +W
Sbjct: 146 YPVISPPSGRNKENQSPSHQICNLSLKW 173
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTGHL-IYKCGGIDKRTIEKF 161
K+K ++++G DSGKST + + I G + I F
Sbjct: 30 KDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTF 70
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 23.4 bits (48), Expect = 9.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 135 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELG 245
+D T + K+A K +KY VLDK R LG
Sbjct: 1102 VDSETASSYAKKAL---KKPYKYDPVLDKYPPSRYLG 1135
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 23.4 bits (48), Expect = 9.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDF 328
F+ ++T +D PGH F
Sbjct: 215 FDKGSKFITFLDTPGHMAF 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,519
Number of Sequences: 5004
Number of extensions: 24038
Number of successful extensions: 116
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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