Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00205
         (335 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   3e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 58   2e-09
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           47   4e-06
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              35   0.014
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.044
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.10 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.71 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              29   1.2  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  27   3.8  
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)          27   5.0  
SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)                   27   5.0  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      26   6.6  
SB_41502| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)              26   6.6  
SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 36  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +2

Query: 257 IALWKFETSKYYVTIIDAPGHRDFIK 334
           IALWKFET KYYVT+IDAPGHRDFIK
Sbjct: 27  IALWKFETLKYYVTVIDAPGHRDFIK 52



 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 180 MGKGSFKYAWVLDKLKAERELGITI 254
           MGKGSFKYAWVLDKLKAERE GITI
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITI 25


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 19/45 (42%), Positives = 31/45 (68%)
 Frame = +3

Query: 120 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITI 254
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+ G T+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTV 210



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 272 FETSKYYVTIIDAPGHRDFI 331
           F+T   + T++DAPGH+ F+
Sbjct: 217 FDTDTKHFTLLDAPGHKSFV 236


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 257 IALWKFETSKYYVTIIDAPGHRDFI 331
           + L +F+T    +T++DAPGH+DFI
Sbjct: 3   VGLTRFQTKNKVITLMDAPGHKDFI 27


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 33.5 bits (73), Expect = 0.044
 Identities = 24/65 (36%), Positives = 30/65 (46%)
 Frame = +3

Query: 60   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 240  LGITI 254
             GIT+
Sbjct: 1987 RGITV 1991


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 36  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 51  THINIVVIGHVDSGKSTTTGHLIY 122
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +3

Query: 33  KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 206
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87

Query: 207 WVLDKLKAERE---LGITIILLSGSSKLASTMLPSLMLL 314
                  A  E   L +T++   G + L  T++    ++
Sbjct: 88  LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQII 126


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 57  INIVVIGHVDSGKSTTTGHLIY 122
           + + V+G+VD+GKST  G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251


>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
          Length = 663

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 EKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
           +++ K  +EM   + K  W  +KLKAE E
Sbjct: 42  KEYSKLKEEMNSDAVKVKWAQNKLKAELE 70


>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
          Length = 334

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 283 ASFELPESNMIVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSM 149
           AS   P  N+  IP+S S  SL  + +Y   PLP    S S  S+
Sbjct: 134 ASRSYPYKNLARIPTSPSLVSLQASPSYPYKPLPRIPTSLSLVSL 178


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 54  HINIVVIGHVDSGKSTTTGHLI 119
           H+   VIGH+    ST  GHLI
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLI 190


>SB_41502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 246 ITIILLSGSSKLASTMLPSLMLLDTEI 326
           IT+I++S SS  +S + PSL L  + I
Sbjct: 95  ITVIIISSSSSSSSLLSPSLSLSSSSI 121


>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
          Length = 556

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 123 KCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITII 257
           KCGG +    E+ E+   EM +G      V+D    EREL I +I
Sbjct: 417 KCGGDECEFSEQEEENVVEMHQGGHTTRAVMDN---ERELFIEVI 458


>SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 66  VVIGHVDSGKSTTTGHLIYKCGG 134
           VVIG  D G +T    L+Y+C G
Sbjct: 557 VVIGFFDGGVNTPIALLVYECVG 579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,924,518
Number of Sequences: 59808
Number of extensions: 180812
Number of successful extensions: 449
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)