Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00205
(335 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 136 3e-33
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 136 3e-33
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 136 3e-33
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 136 3e-33
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 83 4e-17
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 71 3e-13
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 39 7e-04
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 33 0.063
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.063
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.063
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 31 0.19
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 31 0.19
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 30 0.33
At5g06810.1 68418.m00770 mitochondrial transcription termination... 29 0.58
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 0.77
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 28 1.8
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 4.1
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 4.1
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 4.1
At2g44525.1 68415.m05537 expressed protein 26 5.4
At5g46380.1 68418.m05708 hypothetical protein 26 7.2
At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ... 26 7.2
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 26 7.2
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 26 7.2
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 26 7.2
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 26 7.2
At4g12650.1 68417.m01990 endomembrane protein 70, putative TM4 f... 25 9.5
At3g04680.2 68416.m00502 pre-mRNA cleavage complex family protei... 25 9.5
At3g04680.1 68416.m00501 pre-mRNA cleavage complex family protei... 25 9.5
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s... 25 9.5
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 25 9.5
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical... 25 9.5
At1g04150.1 68414.m00405 C2 domain-containing protein contains I... 25 9.5
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 136 bits (330), Expect = 3e-33
Identities = 65/73 (89%), Positives = 66/73 (90%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 57.2 bits (132), Expect = 3e-09
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIK 334
IALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 75 IALWKFETTKYYCTVIDAPGHRDFIK 100
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 136 bits (330), Expect = 3e-33
Identities = 65/73 (89%), Positives = 66/73 (90%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 57.2 bits (132), Expect = 3e-09
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIK 334
IALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 75 IALWKFETTKYYCTVIDAPGHRDFIK 100
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 136 bits (330), Expect = 3e-33
Identities = 65/73 (89%), Positives = 66/73 (90%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 57.2 bits (132), Expect = 3e-09
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIK 334
IALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 75 IALWKFETTKYYCTVIDAPGHRDFIK 100
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 136 bits (330), Expect = 3e-33
Identities = 65/73 (89%), Positives = 66/73 (90%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 57.2 bits (132), Expect = 3e-09
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIK 334
IALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 75 IALWKFETTKYYCTVIDAPGHRDFIK 100
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 83.0 bits (196), Expect = 4e-17
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +3
Query: 51 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 230
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 231 ERELGITI 254
ERE GIT+
Sbjct: 298 ERERGITM 305
Score = 31.9 bits (69), Expect = 0.11
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFI 331
+A+ F + +++V ++D+PGH+DF+
Sbjct: 307 VAVAYFNSKRHHVVLLDSPGHKDFV 331
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 70.5 bits (165), Expect = 3e-13
Identities = 30/70 (42%), Positives = 49/70 (70%)
Frame = +3
Query: 45 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 224
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 225 KAERELGITI 254
+ ER G T+
Sbjct: 158 EEERLKGKTV 167
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFI 331
FET TI+DAPGH+ ++
Sbjct: 174 FETESTRFTILDAPGHKSYV 193
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 39.1 bits (87), Expect = 7e-04
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 33 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 167
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIK 334
++ET + +D PGH D++K
Sbjct: 136 EYETENRHYAHVDCPGHADYVK 157
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 32.7 bits (71), Expect = 0.063
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTT 107
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
Score = 29.1 bits (62), Expect = 0.77
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIK 334
++ET+K + +D PGH D++K
Sbjct: 124 EYETAKRHYAHVDCPGHADYVK 145
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.063
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGG 134
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.063
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTTGHLIYKCG 131
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 31.1 bits (67), Expect = 0.19
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 240 LGITI 254
GITI
Sbjct: 117 KGITI 121
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 287 YYVTIIDAPGHRDF 328
Y V IID PGH DF
Sbjct: 133 YKVNIIDTPGHVDF 146
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 31.1 bits (67), Expect = 0.19
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI + H+DSGK+T T +++ G R E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 240 LGITI 254
GITI
Sbjct: 117 KGITI 121
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 287 YYVTIIDAPGHRDF 328
Y V IID PGH DF
Sbjct: 133 YKVNIIDTPGHVDF 146
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 30.3 bits (65), Expect = 0.33
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 240 LGITIILLSGSSKLASTMLP-SLMLLDT 320
GITI L + + P L L+DT
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDT 159
>At5g06810.1 68418.m00770 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 1141
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 111 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIILLS 266
H + G+D + I K KEA+E+ S++ + K+KA +LG + + LS
Sbjct: 174 HHVLCYSGVDPKRIGKIFKEAREV--FSYETGVLASKIKAYEDLGFSRLFLS 223
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCG 131
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 281 SKYYVTIIDAPGHRDF 328
++Y + +ID+PGH DF
Sbjct: 96 NEYLINLIDSPGHVDF 111
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 24 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 143
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 275 ETSKYYVTIIDAPGHRDF 328
E S Y + +ID PGH DF
Sbjct: 131 EASGYLLNLIDTPGHVDF 148
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 213 IPKHI*RILYPFPGPPSRTSRWYVC 139
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At2g44525.1 68415.m05537 expressed protein
Length = 170
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 274 ELPESNMIVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFS 152
E+P+ + V+PS R AFSL + Q L D +P F F+
Sbjct: 21 EVPKHSNPVLPSLRRAFSLYD-QINLIDNVPEDQLRFQEFN 60
>At5g46380.1 68418.m05708 hypothetical protein
Length = 607
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Frame = -3
Query: 237 HAQPLVCPIPKHI*RILYPFP-----GPPSRTSRW 148
H +PLV P+P H R YP P GP +R+S +
Sbjct: 486 HLRPLVAPLPLH--RDSYPCPPTLAAGPYTRSSAY 518
>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
Homo sapiens, EMBL:HSU81006
Length = 627
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -3
Query: 144 VCQYHHICRSSDQWWW 97
V Y H+C +WWW
Sbjct: 538 VLTYMHLCVEDYKWWW 553
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 30 PKMGKEKTHINIVVIGHVDSGKST 101
P++ + INI IGHV GKST
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST 54
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 30 PKMGKEKTHINIVVIGHVDSGKST 101
P++ + INI IGHV GKST
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST 54
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 30 PKMGKEKTHINIVVIGHVDSGKST 101
P++ + INI IGHV GKST
Sbjct: 25 PEVISRQATINIGTIGHVAHGKST 48
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 30 PKMGKEKTHINIVVIGHVDSGKST 101
P++ + INI IGHV GKST
Sbjct: 25 PEVISRQATINIGTIGHVAHGKST 48
>At4g12650.1 68417.m01990 endomembrane protein 70, putative TM4
family;
Length = 527
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -3
Query: 144 VCQYHHICRSSDQWWW 97
V Y H+C +WWW
Sbjct: 438 VLTYMHLCVEDWRWWW 453
>At3g04680.2 68416.m00502 pre-mRNA cleavage complex family protein
similar to Pre-mRNA cleavage complex II protein Clp1
(Swiss-Prot:Q92989) [Homo sapiens]
Length = 444
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 63 IVVIGHVDSGKSTTTGHLI 119
++V+G DSGKST T L+
Sbjct: 133 VIVVGPTDSGKSTLTKMLL 151
>At3g04680.1 68416.m00501 pre-mRNA cleavage complex family protein
similar to Pre-mRNA cleavage complex II protein Clp1
(Swiss-Prot:Q92989) [Homo sapiens]
Length = 444
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 63 IVVIGHVDSGKSTTTGHLI 119
++V+G DSGKST T L+
Sbjct: 133 VIVVGPTDSGKSTLTKMLL 151
>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3)
strong similarity to dynamin-like protein 6 (ADL6)
[Arabidopsis thaliana] GI:6651399; contains Pfam
profiles PF01031: Dynamin central region, PF00350:
Dynamin family, PF02212: Dynamin GTPase effector domain,
PF00169: PH domain; identical to cDNA dynamin-like
protein ADL3, GI:4803835
Length = 920
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 51 THINIVVIGHVDSGKSTTTGHLI 119
T +N+V +G+V +GKS LI
Sbjct: 37 TSLNVVALGNVGAGKSAVLNSLI 59
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 45 EKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
EK + +V+IG SGKST ++++ G
Sbjct: 18 EKNSV-VVIIGETGSGKSTQLSQILHRHG 45
>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
GI:6651399; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain
Length = 914
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 51 THINIVVIGHVDSGKSTTTGHLI 119
T +N+V +G+V +GKS LI
Sbjct: 37 TFLNVVALGNVGAGKSAVLNSLI 59
>At1g04150.1 68414.m00405 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1012
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 140 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*AWY 247
Q Y E R GG GNG ++ + G + A AW+
Sbjct: 374 QWYKIENRNGGRGNGELMVSVWFGTQADEAFAEAWH 409
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,080,246
Number of Sequences: 28952
Number of extensions: 131298
Number of successful extensions: 419
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -