BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00204 (806 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.8 SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 4.1 SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 4.1 SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 4.1 SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.5 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.6 SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 9.6 SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 9.6 SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 9.6 SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 9.6 SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 9.6 SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 9.6 >SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Schizosaccharomyces pombe|chr 1|||Manual Length = 738 Score = 27.9 bits (59), Expect = 1.8 Identities = 20/72 (27%), Positives = 35/72 (48%) Frame = +3 Query: 39 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 218 S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81 Query: 219 TEKTQKSLFDGI 254 +KS+ D + Sbjct: 82 NITNKKSVTDNL 93 >SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces pombe|chr 1|||Manual Length = 674 Score = 26.6 bits (56), Expect = 4.1 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -2 Query: 223 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 92 SV + DG + + +++RQ V+ P + F + +GR F+E Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127 >SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 325 Score = 26.6 bits (56), Expect = 4.1 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +3 Query: 540 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 680 HKG + +E+++ Y+ VTRK I + P + + SQ I+ PL ++ Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263 >SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 168 Score = 26.6 bits (56), Expect = 4.1 Identities = 14/50 (28%), Positives = 22/50 (44%) Frame = +1 Query: 214 SPLRRPRSLYSTVSEV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGR 363 S L P+S +S + P+ A + + Q+R R+ E P E R Sbjct: 117 STLSTPKSFHSPLQSRGISPSSAQSSAAVSSSRKQKRKRTSEGPSERRAR 166 >SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 26.2 bits (55), Expect = 5.5 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 260 TSDTVE*RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 126 TS ++ G ++G +S +LFIGVD G+ F LQ Sbjct: 377 TSQVID--FFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 25.4 bits (53), Expect = 9.6 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = +1 Query: 391 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 486 ++HD G S + DR + K++ +HRE Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751 >SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizosaccharomyces pombe|chr 2|||Manual Length = 325 Score = 25.4 bits (53), Expect = 9.6 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -2 Query: 418 ILFFRRRVLHLSLVEVFNSVQEVL 347 I++ + + LHL LV +FN E++ Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218 >SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 9.6 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 232 WVFSVATSSADGSTIFSLVSTSRRQL 155 W+FSVA S IFS + T R ++ Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147 >SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 9.6 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 232 WVFSVATSSADGSTIFSLVSTSRRQL 155 W+FSVA S IFS + T R ++ Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147 >SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 9.6 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 232 WVFSVATSSADGSTIFSLVSTSRRQL 155 W+FSVA S IFS + T R ++ Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147 >SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 9.6 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 232 WVFSVATSSADGSTIFSLVSTSRRQL 155 W+FSVA S IFS + T R ++ Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147 >SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces pombe|chr 3|||Manual Length = 497 Score = 25.4 bits (53), Expect = 9.6 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -2 Query: 235 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 137 FW +S+ S G I SL + RQ + +PSS Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,246,529 Number of Sequences: 5004 Number of extensions: 66190 Number of successful extensions: 258 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 240 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 258 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 392429240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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