Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00204
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0203 + 12986685-12988691 32 0.62
03_02_1016 + 13228113-13228964 32 0.62
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 31 1.4
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 31 1.4
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 3.3
09_04_0329 + 16726501-16726750,16726843-16726930,16727280-167273... 29 3.3
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 29 3.3
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 3.3
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 4.4
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 4.4
01_06_0241 - 27813076-27813622,27813695-27814125 29 5.8
09_04_0377 + 17086775-17088310 28 7.6
02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298... 28 7.6
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 28 7.6
>06_02_0203 + 12986685-12988691
Length = 668
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 248 RYQKFDSSQLKHTETQEKN---PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 406
+++K D ++ T T + P+P+ + +AA++AH N G EH K + TTT
Sbjct: 483 KFKKADHAEPPATTTLDAEAAMPVPNSNAIAADEAHGNATAG-EHDKKETAEQTTT 537
>03_02_1016 + 13228113-13228964
Length = 283
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 268 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHD 402
E A AH +G + A+ RRC SG P P RS T HD
Sbjct: 214 EAARAHASNGGKHAAA-RRCSSGNHQPVPRARSTTGMDSLGHGHD 257
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Frame = +1
Query: 268 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGR----S*TLRQDSDEAHDDGRKESTAPDR 435
E R G G+R ESPP P + S +DS E D +E+ P
Sbjct: 60 EEESRSRRHGHHRDGGRRSLSPSESPPPPAAKRERSSSRAPRDSVERRDSADREAPPPSS 119
Query: 436 SYRSGE---GKEQIPERHRELRS 495
R G G E PE + R+
Sbjct: 120 RKRKGHEGGGNESDPEGGKRARA 142
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = +1
Query: 277 EAHRDSGEEPASGQRR--CRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 450
E+ +SG+EP + + SG + P P + D + DD ES+ D +
Sbjct: 328 ESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESSDEDVKQKQT 387
Query: 451 EGKE-QIPERHRELRSH*AEDTETCEKNSLPTK 546
+ K+ Q P S + + ++ ++ P K
Sbjct: 388 QAKKVQAPVAQESSSSDESSEEDSDMESDEPAK 420
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 123 DLKSQLEGFNTSCLRDVDTNEKIVL 197
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +1
Query: 1 PTESLSARIFYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 180
P SL R+ P P I +++PAP PP ++S R+P SSK P P
Sbjct: 641 PPPSLPNRLVPP-PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPP 699
Query: 181 MKR 189
R
Sbjct: 700 ANR 702
>09_04_0329 +
16726501-16726750,16726843-16726930,16727280-16727333,
16727590-16727739,16727884-16728015,16728279-16728423,
16728514-16728552,16728638-16728712,16728935-16728994,
16729120-16729184,16729519-16729609,16729806-16729820
Length = 387
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 362 RPRGSGGLSPLRQRLCPEAGSSPESRCASAG 270
R RG+ G+ LR L P A +SP ++ A+ G
Sbjct: 54 RRRGAHGVRALRPLLLPRASASPSAKTAAGG 84
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Frame = +1
Query: 268 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 447
E E H ++GE+ +C P + + + A ++E T D
Sbjct: 149 ENGEKHEENGEKQNENGEKCEENGGKPAQISDDQAVNGCNGSADKKDKEEETEKDNEKEK 208
Query: 448 GEGKEQIP---ERHRELRSH*AEDTETCEKNSLPTKDVIEQEK 567
+ +E+ E+ +E + + EK L D E+EK
Sbjct: 209 EDKEEETEKDNEKEKEDKEEETKKDNEKEKEQLMGTDEKEKEK 251
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 257 KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 415
K+D + ++ E QEK K + K ++ VE K +M HT+ ++
Sbjct: 262 KYDMKKKEYKEAQEKEKTEKKKMEEVAKIWEDSKGPVEELKKKKMSHTSNTKR 314
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 130 RVSSKASTPAVSVTSTPMKRLCFR 201
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 85 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 177
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 376 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH 498
R + + H+ ++S +RS+R+ ++ + HR RSH
Sbjct: 21 RVEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSH 61
>09_04_0377 + 17086775-17088310
Length = 511
Score = 28.3 bits (60), Expect = 7.6
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 274 AEAHRDSGEEPASGQRRCRSGESPPEPL-GRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 450
++ + E+ S ++ S +S E G S + +SD D + + T + R G
Sbjct: 160 SDEEEEEEEKKESPKKVASSDKSEEEDSKGSSESDSGESDSLSDSSKSDDTRRKKKGRKG 219
Query: 451 EGKEQIPERHRELRSH*AEDTETCEKNSLPTKD 549
+ RHR R H + DTE + NS +D
Sbjct: 220 SHRSSKRSRHR--RRHHSSDTEG-DDNSKAEED 249
>02_04_0650 +
24728700-24728725,24729582-24729660,24729802-24729889,
24730216-24730297,24731083-24731278,24731432-24731816,
24733332-24734428,24734621-24734886,24735565-24735631,
24735722-24735772,24736033-24736123,24736239-24736345
Length = 844
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 644 YINIKIRRY*RDTFASNCYKVVVQADFSCSMTSFVGSEF 528
Y+NI + R D S+C++ + C+ + G EF
Sbjct: 520 YVNISLARIGDDNCCSDCFRDCLAQSLPCACAAETGGEF 558
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 343 PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 477
PP P GR RQ + DG+ + D S RS +G P++
Sbjct: 89 PPPPRGRRRVTRQFWNAGDYDGKPDLLGGDPSLRSDDGGGMDPDK 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,959,771
Number of Sequences: 37544
Number of extensions: 474283
Number of successful extensions: 1546
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -