Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00204
(806 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 63 3e-10
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.039
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 32 0.48
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.83
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 31 0.83
SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 25 1.8
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 30 1.9
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 30 1.9
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.5
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0) 30 2.5
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6) 29 3.4
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 29 3.4
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 5.9
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 29 5.9
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 29 5.9
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 29 5.9
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 7.7
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1) 28 7.7
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 28 7.7
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 62.9 bits (146), Expect = 3e-10
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +2
Query: 230 PEVF--IRRYQKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 403
PEV + FD+S+LKH E QEKNPLP KD + E V+ FD +++KH
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHVQ 731
Query: 404 TEEKNPL 424
TEEKNPL
Sbjct: 732 TEEKNPL 738
Score = 60.5 bits (140), Expect = 2e-09
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = +2
Query: 230 PEVFIRRYQ--KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 403
PEV R + KFD+S+LKH ET+EK +P KDV+ AE V+ FD +++KH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVV 579
Query: 404 TEEKNPL 424
T+EKNPL
Sbjct: 580 TQEKNPL 586
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/57 (50%), Positives = 37/57 (64%)
Frame = +2
Query: 254 QKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 424
+ F+ S+L+H ET+EKN LP KD +A EK GVE F K ++KH T EKNPL
Sbjct: 455 KSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNPL 510
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 254 QKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPL 424
+ FD S+LKH ET EKNPLP V+ E + L D V FD +++KH +EKNPL
Sbjct: 644 KSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPL 702
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = +2
Query: 254 QKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKN 418
+ FD S+LKH TQEKNPLP + E +N D V FD T++KH TT+EK+
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKS 624
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +2
Query: 257 KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPL 424
KFD++ LKH +T+EKN LP + + E D V+ F+K++++H T+EKN L
Sbjct: 416 KFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTL 473
Score = 49.2 bits (112), Expect = 4e-06
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 260 FDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEK 415
F ++LKH ET EKNPLPD + AE + L D V FD +++KH T+EK
Sbjct: 494 FQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEK 547
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 260 FDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 424
FD ++LKH TQEK+ +P ++ + E V+ FD +++KH T EKNPL
Sbjct: 610 FDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPL 662
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 260 FDSSQLKHTETQEKNPLPDKDVVAAEKA 343
FD S+LKH +T+EKNPLPD +A EKA
Sbjct: 722 FDHSKLKHVQTEEKNPLPDAKTIAQEKA 749
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +3
Query: 105 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 224
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 397 HDDGRKESTAP-DRSYRSGEGKEQIPERH--RELRSH*AEDTETCEKNSLPTKDVIEQEK 567
H ++++T P D + + ++ P+R + + ET EKN+LPTKD I EK
Sbjct: 424 HVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK 483
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 105 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 224
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.039
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 93 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 248
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 32.3 bits (70), Expect = 0.48
Identities = 28/93 (30%), Positives = 37/93 (39%)
Frame = +1
Query: 208 KTSPLRRPRSLYSTVSEV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDS 387
++S RRPRS S S P+ RDS E S + + SPP S S
Sbjct: 32 RSSVDRRPRS--SRESPERKRPSSLGRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPS 89
Query: 388 DEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 486
+ DD R R R +E+ P R R+
Sbjct: 90 RRSSDD-RSTDARDRRDRRRSSSRERRPPRDRD 121
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 23 ESSIPFLIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 157
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/94 (14%), Positives = 45/94 (47%)
Frame = +1
Query: 286 RDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 465
++ G+ + +++ R E P + L + ++ D+ + +E PD+ + +++
Sbjct: 829 QEQGKPDKNKEKQDREQEKPDKDLEKQYQKQEKPDKGQEKQDREQEKPDKDQEKQDREQE 888
Query: 466 IPERHRELRSH*AEDTETCEKNSLPTKDVIEQEK 567
P++ +E + H E + ++ ++ ++E+
Sbjct: 889 KPDKDQEKQDHEQEKPDKDQEKQDREQEKTDKER 922
>SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Frame = +1
Query: 277 EAHRDSGEEPA--SGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 450
EA RD +E S R + G R DEA DG E+T +
Sbjct: 73 EATRDGNDEATRDSHDEATRDSQDEAARDGHDEATRDSHDEATRDGHDEATRDSHDEATR 132
Query: 451 EGKEQIPERHRELRSH*AEDTETCEKNSLPTKDVIEQE 564
+G ++ + + + D T + + T DV E
Sbjct: 133 DGNDEATRDSHDRATRDSHDRATRDSHDRATLDVTGDE 170
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 24.6 bits (51), Expect(2) = 1.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 382 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHREL 489
DSD+ +DD +STA R R + + P R L
Sbjct: 281 DSDDDYDDREGDSTAKIRKGRRSDTDDLSPNPRRLL 316
Score = 24.2 bits (50), Expect(2) = 1.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 265 FEPAEAHRDSGEE 303
FEP E H DSG+E
Sbjct: 266 FEPMEIHDDSGDE 278
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 287 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 397
+T E++P DK A +LLDG+ FD+ + +H
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEH 297
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 287 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 397
+T E++P +K A +LLDG++HF + + +H
Sbjct: 163 KTIEQDPSSEKSYQALRDTTHDLLDGLQHFGQAKEEH 199
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -1
Query: 230 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 87
GLL+GD+F R K N+ I VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 75 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 221
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -1
Query: 230 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFEL 135
GLL+GD+F R K N+ I VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)
Length = 470
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 388 DEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEDTETCEKNSLPTKDVIEQE 564
D + D E T P R +G+ + RHR+ + A+ + ++ P+ DVI Q+
Sbjct: 370 DRSQSDSEPEDTTPLRQKGAGKDNSR-KRRHRKKTGNEAQHSAGSDEEDEPSYDVISQD 427
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 415 ESTAPDRSYRSGEGKEQIPERHR 483
+STA D SY SG G E P HR
Sbjct: 483 DSTASDSSYDSGSGPELSPNEHR 505
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = -1
Query: 281 ASAGSNQTSDTVE*RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEV 102
A+A TSDT+ L G S F+ + V + V ++ LTL V V
Sbjct: 914 ATATDQDTSDTLTYALTGTNSAH-FAVSSTGMISTAHVLDRESVSSYSLTLSVSDGTANV 972
Query: 101 FQGGSVT 81
QG S+T
Sbjct: 973 TQGVSIT 979
>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
Length = 692
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 287 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 397
+T E++P +K A +LLDG+ +FD+ + +H
Sbjct: 537 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQAKEEH 573
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 287 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 397
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 567 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 603
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 287 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 397
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 492 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 528
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 637 LM*VRSICVVHYKFYFCFCTMATLPG 714
L+ V IC VH FY+C C +++ G
Sbjct: 55 LVAVLRICSVHLDFYYCTCVWSSMAG 80
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +1
Query: 286 RDSGEEPASGQRRCRSG-ESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKE 462
+DS E ++ R G E + + ++ ++ DE DD + D SG+GK+
Sbjct: 795 KDSSESEKGKAKKQRKGREKKGKEIKKNDDEEEERDEEEDDEEDDDEEDDSKKASGKGKK 854
Query: 463 QIPERHRELRSH*AEDTETCEKNSLPTK 546
+ ++ +S ++ E E++ TK
Sbjct: 855 G-QDNKKKGKSKKDDEDEEAEEDGEKTK 881
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 225 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 109
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Frame = +1
Query: 40 PHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFR------ 201
P + + E P P + L P T+ P+ V +ASTP S +P R
Sbjct: 517 PRNSFAEYEKPLPTLPLSPTNTTTGRPRLSTVPPEASTPTDSFPKSPTSATRKRPSEGGD 576
Query: 202 LLKTSPLRRPRSLYSTVSEV*FEPAEAHRDSGEEPASGQRRCR 330
L P RP + T S+ P + + P S RC+
Sbjct: 577 ALTEGPYVRPGTPMGTGSQT-SAPLGSDPYLSKTPTSSINRCK 618
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -2
Query: 469 EFVLFLLRFDSFDRGQWILFFRRRVLHLSLVEVFNSVQEVL 347
+FVL++LRF +D I ++ + HL+LVE + +Q+ L
Sbjct: 295 DFVLYMLRFSDYD----IYTGKKSIAHLTLVEFESWLQDEL 331
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 594 VTRKCISLVSPYFNIDVSQIDL 659
+ KC L+SPY ++D+ DL
Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 96 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 224
L DL +V +LKS+ EG CL D++ + DV E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166
>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
Length = 766
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 296 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 397
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 75 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 108
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 296 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 397
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 173 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 206
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 296 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 397
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 222 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 255
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 296 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 397
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 320 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 353
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 218 H*EDPEVFIRRYQKFDSSQLKHTETQEKNPLPDKDVV 328
H +P+ + ++ FDS LKH ++ N +P+ V
Sbjct: 370 HEHEPKQDLYHHEDFDSYSLKHERVKQSNTVPNPSKV 406
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,907,972
Number of Sequences: 59808
Number of extensions: 531918
Number of successful extensions: 1755
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1742
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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