Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00204
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 51 1e-06
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 32 0.42
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 31 1.3
Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical pr... 30 2.2
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 29 3.0
U11279-2|AAW88400.1| 714|Caenorhabditis elegans Sensory axon gu... 29 5.2
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 29 5.2
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 29 5.2
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 5.2
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 6.8
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 6.8
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 28 9.0
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 28 9.0
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/102 (29%), Positives = 43/102 (42%)
Frame = +2
Query: 272 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXX 451
+LK ET EKN LP K+ VA EK H + +EHFD T++ T +EK L
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82
Query: 452 XXXNKFLNGIENFDPXXXXXXXXXXXXXSPQRTSLSKRNQLE 577
+ + I NF P T +++ L+
Sbjct: 83 KQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQ 124
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +2
Query: 242 IRRYQKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNP 421
I + FDS++L T +EK LP D + EK H L D + +F +K T T EKN
Sbjct: 51 IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110
Query: 422 L 424
L
Sbjct: 111 L 111
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 135 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIRS 260
++E F+++ L EKIVLPSA+D+ EK L D I +
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINN 94
Score = 35.9 bits (79), Expect = 0.034
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +2
Query: 248 RYQKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 406
+ F S LK TET EKN LP VA EK L FDK+ + H T
Sbjct: 91 KINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 90 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 230
PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 93 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 227
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 32.3 bits (70), Expect = 0.42
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +1
Query: 286 RDSGEEPASGQRRCRSGESPPEPLGRS*TLR-QDSDEAHDDGRKESTAPDRSYRSGEGKE 462
+D + +R+ + S + GR + + + D R +P+RS RS E +
Sbjct: 233 KDKNRKKEKTERKRKRSHSSSDRRGRRTSKESRRRSRSRDTHRTRRRSPERSRRSTETRN 292
Query: 463 QIPERHRELRSH*AE--DTETCEKNSLPTKDVIEQEK 567
+ PER RS E + ++ + +++VI++EK
Sbjct: 293 ERPERPSRWRSRSRERKEYDSYRRRRSRSREVIDKEK 329
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Frame = +1
Query: 136 SSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSEV*FEPAEAHRDSGEEPA 309
SS AS A SVT T ++ + + + KT P R +SL + PA+ + EEP
Sbjct: 251 SSIASYSAESVTETALESVNTKSVESKTRPSSRRKSLILGAASPLKSPAKIEKPRLEEPE 310
Query: 310 SGQRRCRS----GESPPEPLGRS*TLRQDSDEAHDDGRKESTAP 429
+R R EP +S L +D E ++E+ P
Sbjct: 311 QKSKRSRRSLRLNPDAIEPPVKSCDLLEDEREESSSKKRENHDP 354
>Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical
protein F54B8.3 protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -2
Query: 520 TFPCLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRR-----RVLHLSLVEVFNSVQ 356
TF + L+ ++V A++ F ++ DR Q I +F+R LH+ VE++NS
Sbjct: 98 TFLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYV 155
Query: 355 EVLVGFLRC 329
+ ++ LRC
Sbjct: 156 DDVMTILRC 164
>Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical
protein F13B12.1 protein.
Length = 511
Score = 29.9 bits (64), Expect = 2.2
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Frame = +1
Query: 148 STPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSEV*FE-PAEAHRDSGEEPASGQRR 324
++PA S S+P+ + R +P + + FE PA RDS PAS
Sbjct: 14 TSPASSGASSPLAPISPRSEGNAPESPSGDVQDIYKDESFEAPASPARDS-SAPASPSAA 72
Query: 325 CRSG-ESP-PEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH 498
+G SP P P+ + DSDE D E +A R+ + + ++ R +
Sbjct: 73 SPAGSRSPSPSPVKTKSKVMIDSDE---DSDAEESANKRALIDSDASDAEGKKRRVMLDS 129
Query: 499 *AEDTETCEKNSLPTKDV 552
D E K TK++
Sbjct: 130 DDSDHEGTSKKEPTTKNL 147
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 382 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEDTET---CEKNSLPTKDV 552
D+DE H K+S A D + +E +P++ +E++ E+ E+ S +D+
Sbjct: 127 DTDEEHSSADKKSKAEDEE-EVEDDEEPVPKKKKEVQEEPEEEESVEGEDEEESQEVEDL 185
Query: 553 IEQEK 567
E EK
Sbjct: 186 KEDEK 190
>U11279-2|AAW88400.1| 714|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform b protein.
Length = 714
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 442 RSGEGKEQIPERHRELRSH*AEDTETCEKNSLPTK---DVIEQE 564
+ GE +E+ PE E SH E+ E E + LP K D +E+E
Sbjct: 217 QGGEEEEEEPEEDEESESH--EEEENSESDDLPRKVEDDDLEEE 258
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 442 RSGEGKEQIPERHRELRSH*AEDTETCEKNSLPTK---DVIEQE 564
+ GE +E+ PE E SH E+ E E + LP K D +E+E
Sbjct: 2389 QGGEEEEEEPEEDEESESH--EEEENSESDDLPRKVEDDDLEEE 2430
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 442 RSGEGKEQIPERHRELRSH*AEDTETCEKNSLPTK---DVIEQE 564
+ GE +E+ PE E SH E+ E E + LP K D +E+E
Sbjct: 2417 QGGEEEEEEPEEDEESESH--EEEENSESDDLPRKVEDDDLEEE 2458
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 277 EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 417
E + E+ + R E PEPL R D DE DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.3 bits (60), Expect = 6.8
Identities = 30/131 (22%), Positives = 50/131 (38%)
Frame = +1
Query: 91 PP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSEV*FE 270
P + SP + ++ + + +P+ S + P + +P RR RS ++ S
Sbjct: 302 PRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPP-A 360
Query: 271 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 450
P A S PA +R + +SPP P R+ ++ K P R RS
Sbjct: 361 PKRAKSRSKSPPARRRRSPSASKSPPAP-----RRRRSPSKSRSPAPKREIPPARRRRSP 415
Query: 451 EGKEQIPERHR 483
+ P R
Sbjct: 416 SASKSPPAPKR 426
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 28 FYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 207
F P+P + + + P TSP+SP + S++ P VSVTS P ++
Sbjct: 19 FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75
Query: 208 KTSPLRR 228
+P+++
Sbjct: 76 TVTPIQQ 82
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Frame = +1
Query: 277 EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEG 456
E D ++ ++ +SP +P ++ DSD DD S+ P+ + E
Sbjct: 175 ETPEDEDDDDFGEVSESKAEKSPGKPSEKAAVSDSDSDSDDDDSSNWSSEPESNSSDDED 234
Query: 457 K----EQIPE--RHRELRSH*AEDTETCEKNSLPTKDVIEQEKSA 573
EQ+ +E R +D + +K + K+ +E++ A
Sbjct: 235 SVTKMEQLRRYFLKKEFRVESKDDKKEKKKRVIRVKEAVEEDDDA 279
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +1
Query: 319 RRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH 498
RR RS ESP R +S D S++ RS + + R SH
Sbjct: 240 RRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRSSSYSSRSRSRTPQRSRTSKRRRSNSH 299
Query: 499 *AEDTE 516
+ED++
Sbjct: 300 ASEDSD 305
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +1
Query: 319 RRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH 498
RR RS ESP R +S D S++ RS + + R SH
Sbjct: 240 RRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRSSSYSSRSRSRTPQRSRTSKRRRSNSH 299
Query: 499 *AEDTE 516
+ED++
Sbjct: 300 ASEDSD 305
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +1
Query: 376 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEDTETCEKNSLPTKD 549
+ D+ + DD +KE D+ + E KE+ E +E + ++ E E+ K+
Sbjct: 154 KSDNKDDKDDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEKKEEEKKEEKKEEKKE 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,161,182
Number of Sequences: 27780
Number of extensions: 384598
Number of successful extensions: 1289
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -