Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00204
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.62 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   2.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.5  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 340  SPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKE 462
            SPP PL  S    +D D   D  + + ++ +R   +G  +E
Sbjct: 1396 SPPTPLSISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQE 1436


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 220 LRRPRSLYSTVSEV*FEPAEAHRDSGEEPASGQR 321
           LRR R L +TV+         H DSG   ++ QR
Sbjct: 248 LRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQR 281


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 316 QRRCRSGESPPEPLGR 363
           Q +C  GE+P +P+GR
Sbjct: 51  QLKCALGEAPCDPVGR 66


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 75  SVSDTPSLKDLPKVATDLKS 134
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 316 QRRCRSGESPPEPLGR 363
           Q +C  GE+P +P+GR
Sbjct: 51  QLKCALGEAPCDPVGR 66


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 685 CFCTMATLPGQWRRTATPDFIQILTI 762
           C C+M  LPG   +T+T ++ +I+ +
Sbjct: 684 CNCSMDWLPGINNQTSTREYPRIMDL 709


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,424
Number of Sequences: 438
Number of extensions: 4847
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)