Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00204
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04940.1 68414.m00491 tic20 family protein similar to Tic20 (...    30   2.1  
At2g33793.1 68415.m04145 expressed protein                             29   3.6  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    29   4.8  
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    29   4.8  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   6.3  

>At1g04940.1 68414.m00491 tic20 family protein similar to Tic20
           (GI:3769673) [Pisum sativum]; contains TIGRFAM IGR00994:
           chloroplast protein import component, Tic20 family
          Length = 501

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 799 WRPLAVYWRKA*LSLGFE*NPGLLYAAIAQAVLPLYKNKNKT-CNGRRKSI*LTSILKYG 623
           W PL VYW K  +          L+  +      L  +K +T C G+RK   +  + K+ 
Sbjct: 207 WMPLGVYWGKFGMHFWTAVAFAYLFTVLESIRCALAAHKQRTGCTGKRKFTDVVPLSKFD 266

Query: 622 DTSEIHLRVTVIK 584
           D    +L ++VIK
Sbjct: 267 D----NLLLSVIK 275


>At2g33793.1 68415.m04145 expressed protein
          Length = 212

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 373 LRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEDTETCEKNSLPTKDV 552
           L+Q  ++AH+DGRK+      S  S E K +I E   +L       ++   K+S   +++
Sbjct: 47  LQQFREKAHEDGRKKKEESISSV-STEVKSKIDELKSKLEKERQNFSKALSKSSKECENI 105

Query: 553 IEQE 564
           ++ E
Sbjct: 106 LKDE 109


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +3

Query: 6   RVAECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 185
           R+A C     P   ++  F  + S S + SL+D+  ++ +LK  L+G  +     VDTN 
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569

Query: 186 KIVLPSAEDVATEK 227
                 AED A E+
Sbjct: 570 ----LDAEDRAAER 579


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 75  SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 239
           S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E    S
Sbjct: 78  SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 227 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 108
           ++ G+    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,313,982
Number of Sequences: 28952
Number of extensions: 365691
Number of successful extensions: 1227
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)