Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00203
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    55   1e-08
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    27   2.6  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    27   3.5  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.0  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   8.0  

>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 24/62 (38%), Positives = 39/62 (62%)
 Frame = +2

Query: 2   DAEQTYFQPAISRICLEMMRRYNKDKFLVFNTYQTYLKNTYNEIVTDLEQAHRQNFFWGA 181
           DAEQTYFQ  +  + +++MR+YNK+  +V NTYQ YLK +   +   +++   + +  GA
Sbjct: 267 DAEQTYFQDCMHAVTVDLMRKYNKEVAIVHNTYQLYLKKSRKIMDDHIKKCVAEGWLMGA 326

Query: 182 XL 187
            L
Sbjct: 327 KL 328



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = +3

Query: 315 VKSGKTGLGIMVASHNEDTVRYAIQLMKEHNIKPEDKVVCFGQLLGMCDHITFPL 479
           + S K   GIMVASHN+ T+  ++ L +   +          QLLGM D IT+ L
Sbjct: 379 IASRKGKWGIMVASHNKKTMFESVNLAETKKVDFTKTSFYLAQLLGMADDITYAL 433



 Score = 32.3 bits (70), Expect = 0.070
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 500 LQVVPYGPVVEVLPYLSRRANEN 568
           ++ V  GP+ EVLPYL RRA EN
Sbjct: 447 VKYVSCGPISEVLPYLVRRAREN 469


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 455 HSKQLTEADDLVFRLD---IMFLHQLNGVADSILVVRSHHDAEAGLAGFN 315
           HS ++ +    V RL    ++FL ++N     I +VR+ +  ++GL  +N
Sbjct: 249 HSPEILDETSSVIRLSNDLVLFLREMNQYLALICIVRADNFEKSGLIEYN 298


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 336 LGIMVASHNEDTVRYAIQLMKEHNIKP 416
           LGI + +H  D + Y +   KE ++KP
Sbjct: 159 LGIAIEAHRLDIIEYILNADKETDLKP 185


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 50  EMMRRYNKDKFLVFNTYQTYLKNTYNEIVT-DLEQAHRQNFFWGAXLCVALISSRSEHAL 226
           EM+  +    + V N +  +L NT  +    DL+ A      W A LC  L+ S+  H L
Sbjct: 296 EMVESFLLFAYGVSNVWLEHLGNTDGKWNHHDLQHASLAFMLWWAGLCGILVESKVVHRL 355


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 65  YNKDKFLVFNTYQTYLKNTYNEIVTDLEQAHR 160
           Y+ ++    NTY  Y  N    IV D + +HR
Sbjct: 352 YSVEEIDPLNTYNIYYTNEDTSIVLDTQLSHR 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,818
Number of Sequences: 5004
Number of extensions: 54843
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)