Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00203
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197 40 0.002
10_02_0054 + 4612464-4612823 30 2.1
01_06_0660 + 30969879-30970218,30970346-30970514,30971373-309716... 29 3.6
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 29 3.6
08_02_1078 + 24179558-24179936,24180577-24180634,24180721-241808... 28 6.3
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 28 6.3
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 28 6.3
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 28 8.3
>10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197
Length = 490
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 509 VPYGPVVEVLPYLSRRANENRG 574
+PYGPV +++PYL RRA ENRG
Sbjct: 441 LPYGPVEQIIPYLIRRAEENRG 462
Score = 36.7 bits (81), Expect = 0.018
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Frame = +3
Query: 162 RISSGGRXC-AWRLYRAGASTR-----CRHGIRGSHVENVDATTASFHKCLKEILSRVKS 323
R + G R C A +L R R G+ ++ T ++ C +L RV+
Sbjct: 320 RAAQGERVCLALKLVRGAYLAREARLAASLGVPSPVHRSIQDTHDCYNGCAAFLLDRVRR 379
Query: 324 GKTGLGIMVASHNEDTVRYAIQLMKEHNIKPE-DKVVCFGQLLGMCDHITFPLGQAGYSV 500
G + +A+HN ++ + A E I D+ + F QL+GM D ++ L AG+ V
Sbjct: 380 GAAA--VTLATHNVESGQLAAARALELGIGGGGDRGLQFAQLMGMADGLSLGLRNAGFQV 437
Query: 501 YK 506
K
Sbjct: 438 SK 439
>10_02_0054 + 4612464-4612823
Length = 119
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 185 LCVALISSRSEHALPPWDTRIPRGERGRHHRILPQVPQGNS--QQG*IRQDRPRHH 346
+ +A + R EH P R+P G R R+ VP GN ++ R+DR RH+
Sbjct: 24 ILLARATVRQEHGQRP--LRLPSGSGRRQLRLSSNVPAGNQLRRRQLRREDRARHY 77
>01_06_0660 +
30969879-30970218,30970346-30970514,30971373-30971635,
30971717-30971864,30972019-30972082,30972225-30972248
Length = 335
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 550 AEGERKPGF--PQENQEGEEATPQRNRPQVVSGQMFYKPIGNYTPV 681
A ERK G P G ATP RNRPQ G+ P+ + P+
Sbjct: 138 AVSERKKGCCPPPPPPHGAPATPARNRPQ-TQGRGAAAPVVGWPPI 182
>01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 502 TSSAIWTCS*SPTVFIAEGERKPGFPQENQEGEEATPQRNRPQVVSGQMF 651
++SAI + + SP F++ PG P N P N PQ+VS +F
Sbjct: 1003 SNSAIPSTAQSPNCFLSISANSPGGPTSNMFA--VGPYANEPQLVSPPVF 1050
>08_02_1078 +
24179558-24179936,24180577-24180634,24180721-24180804,
24180908-24181010,24181359-24181649
Length = 304
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 322 DLTLLRISLRHLWKDAVVASTFSTWDPRIP 233
+LTL +SL D+ ++S+ S+W+P++P
Sbjct: 39 NLTLSSLSLSQNSNDSSLSSSNSSWEPKVP 68
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 502 TSSAIWTCS*SPTVFIAEGERKPGFPQENQEGEEATPQRNRPQVVSGQMF 651
++SAI + + SP F++ PG P N P N PQ+VS +F
Sbjct: 227 SNSAIPSTAQSPNRFLSISANSPGGPTSNMFA--VGPYANEPQLVSPPVF 274
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 294 LKEILSRVKSGKTGLGIMVASHNEDTVRYAIQLMKEH 404
++E+L VK+ GL ++ A H ED + +A+ L+ H
Sbjct: 585 VREVLEIVKNANQGLLLVGAIHTEDDI-WAVTLLARH 620
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 227 PPWDTRIPRGERGRHHRILPQVP 295
PP D R RG+R HHR+ P P
Sbjct: 124 PPGD-RADRGDRDHHHRVTPWRP 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,099,820
Number of Sequences: 37544
Number of extensions: 404269
Number of successful extensions: 1159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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