Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00203
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   6e-10
SB_26549| Best HMM Match : Pro_dh (HMM E-Value=1.3)                    52   6e-07
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)               30   1.6  
SB_52377| Best HMM Match : 7tm_1 (HMM E-Value=4e-06)                   29   2.8  
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_39477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            28   6.4  

>SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 46/108 (42%), Positives = 56/108 (51%), Gaps = 28/108 (25%)
 Frame = +3

Query: 267  ATTASFHKCLKEILSRVKSGKTGLGIMVASHNEDTV------------------RYAIQL 392
            AT+  +++ L +IL   + G  G  +MVASHNED+V                  RYA   
Sbjct: 770  ATSECYNQTLNDILEECRRG--GANVMVASHNEDSVRFAVKRKWYSTYGEDLLLRYANHY 827

Query: 393  ----------MKEHNIKPEDKVVCFGQLLGMCDHITFPLGQAGYSVYK 506
                      M E  I PEDK V FGQLLGM D ++F LGQAGYSVYK
Sbjct: 828  RCVFLFSSTGMYELGISPEDKKVFFGQLLGMSDPLSFTLGQAGYSVYK 875



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +2

Query: 509 VPYGPVVEVLPYLSRRANENRG 574
           VPYGPV +VLPYLSRRA ENRG
Sbjct: 877 VPYGPVEDVLPYLSRRAMENRG 898



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +1

Query: 166 FLLGGEXVRGAYIEQERARAAAMGYED 246
           F  G + VRGAY+EQER RA ++GY+D
Sbjct: 736 FKFGAKLVRGAYMEQERLRAQSLGYDD 762


>SB_26549| Best HMM Match : Pro_dh (HMM E-Value=1.3)
          Length = 160

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = +2

Query: 2   DAEQTYFQPAISRICLEMMRRYNKDKFLVFNTYQTYLKNTYNEIVTDLEQAHRQNFFWGA 181
           DAEQ+Y +  I  + L +  +YNK    V+ TYQ Y K+T + ++ DL+    + F +GA
Sbjct: 32  DAEQSYLEGGIHHLILALQSKYNKQGSWVYGTYQCYRKDTMSRVLRDLQVMSTEGFHFGA 91

Query: 182 XL 187
            +
Sbjct: 92  KI 93



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 166 FLLGGEXVRGAYIEQERARAAAMGY 240
           F  G + VRGAY + E  RA  MGY
Sbjct: 87  FHFGAKIVRGAYRQMEEKRAQEMGY 111


>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +2

Query: 227 PPWDTRIPRGERGRHHRILPQVPQGNSQQG*IRQDRPRHHGGFSQRGYCPLRHSTDEGT 403
           P W T+    ++     I P  PQG  QQG +    P    G  Q+G  P+  S  +GT
Sbjct: 485 PVWPTQPQGTQQQASQPIQPTQPQGTQQQGTL-PIYPSQPQGTQQQGTLPIYPSQPQGT 542


>SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
          Length = 786

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 280 DAVVASTFSTWDPRIPWRQRVLAPARYKRHAQ 185
           D  +AST  T +P  P + R  +P++  RH Q
Sbjct: 639 DGTIASTAQTTNPAFPGKSRKTSPSKTSRHKQ 670


>SB_52377| Best HMM Match : 7tm_1 (HMM E-Value=4e-06)
          Length = 343

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 294 GTCGRMRWWRPRSPRGILVSHGGSACSL-LLDISATHXFAPQKKFCLWACSRSV 136
           G    +RW R RSP  IL+     ACSL ++ +   H F   K      C RS+
Sbjct: 52  GAAAYLRWTRGRSPEKILI-FNLVACSLVMVVVLPIHAFLVTKLGSFLLCDRSL 104


>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 294 GTCGRMRWWRPRSPRGILVSHGGSACSL-LLDISATHXFAPQKKFCLWACSRSV 136
           G    +RW R RSP  IL+     ACSL ++ +   H F   K      C RS+
Sbjct: 333 GAAAYLRWTRGRSPEKILI-FNLVACSLVMVVVLPIHAFLVTKLGSFLLCDRSL 385


>SB_39477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 195 RLYRAGASTRCRHGIRGSHVENVDATTASFHK-CLKEILSRVKSGKTGLGIMVASHNEDT 371
           RL    A   C   +  +H  +++  TAS    C+ E++  +K+GK          N+D 
Sbjct: 252 RLADIAALQECEKELESTHDGDINGNTASKKPICVDELIEMLKNGKLKNFTSKEKDNDDG 311

Query: 372 VRY 380
            RY
Sbjct: 312 TRY 314


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 488 WLFGLQVVPYGPVVEVL--PYLSRRANE 565
           WLFG+ +V YG   E+   PY+S  +N+
Sbjct: 375 WLFGIALVGYGAYAEIKFGPYISISSND 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,537,304
Number of Sequences: 59808
Number of extensions: 440844
Number of successful extensions: 1292
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)