Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00203
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82256-6|CAB05117.2| 616|Caenorhabditis elegans Hypothetical pr... 104 7e-23
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 31 0.80
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 31 0.80
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 31 0.80
Z68752-3|CAE54905.1| 888|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68752-2|CAE54904.1| 912|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical pr... 29 2.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.3
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.3
AC006630-7|AAK68329.1| 99|Caenorhabditis elegans Hypothetical ... 29 4.3
Z66522-6|CAH04737.1| 1147|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z66522-5|CAA91405.1| 1149|Caenorhabditis elegans Hypothetical pr... 28 5.7
AC024202-8|AAK93869.2| 816|Caenorhabditis elegans Hypothetical ... 28 5.7
Z81064-2|CAB02963.1| 259|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 27 9.9
AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 27 9.9
>Z82256-6|CAB05117.2| 616|Caenorhabditis elegans Hypothetical
protein B0513.5 protein.
Length = 616
Score = 104 bits (249), Expect = 7e-23
Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 ENVDATTASFHKCLKEILSRV-KSGKTGLGIMVASHNEDTVRYAIQLMKEHNIKPEDKVV 431
+N +AT+ + CL I V + GKT + +MVASHNEDTVR+A+ LMKE I P ++V+
Sbjct: 476 DNFEATSKMYESCLTRIADEVHRRGKTNVSVMVASHNEDTVRFALNLMKEKCISPSERVM 535
Query: 432 CFGQLLGMCDHITFPLGQAGYSVYK 506
C QL GMCD ++F LGQAG+SVYK
Sbjct: 536 CMAQLYGMCDQVSFSLGQAGFSVYK 560
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +2
Query: 2 DAEQTYFQPAISRICLEMMRRYNKDKFLVFNTYQTYLKNTYNEIVTDLEQAHRQNFFWGA 181
DAEQTY QPAIS+I +EMM++YNK + +FNTYQ YLK T + D++ A R+ + +GA
Sbjct: 391 DAEQTYLQPAISKITIEMMKKYNKGRGNIFNTYQAYLKGTLQNMEADMQVARREGWHFGA 450
Query: 182 XL 187
L
Sbjct: 451 KL 452
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 175 GGEXVRGAYIEQERARAAAMGYED 246
G + VRGAY+EQERARA A+GYED
Sbjct: 449 GAKLVRGAYMEQERARAKAIGYED 472
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +2
Query: 470 FSFRSSWLFGLQVVPYGPVVEVLPYLSRRANEN 568
FS + + +PYGPV EVLPYLSRRA EN
Sbjct: 549 FSLGQAGFSVYKYLPYGPVEEVLPYLSRRALEN 581
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +3
Query: 228 RHGIRGSHVENVDATTASFHKCLKEILSRVKSGKTGLGIMVASHNEDTVRYAIQ---LMK 398
RH HV D A F K L ++ K KT ++ S +A L+
Sbjct: 664 RHASLTLHVYGYDEKQALFAKHLANRMTNFKIDKTRFDVLFESLKRALTNHAFSQPYLLT 723
Query: 399 EH--NIKPEDKVVCFGQLLGMCDHIT 470
+H + DKV QLL +CD +T
Sbjct: 724 QHYNQLLIVDKVWSKEQLLAVCDSVT 749
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +3
Query: 228 RHGIRGSHVENVDATTASFHKCLKEILSRVKSGKTGLGIMVASHNEDTVRYAIQ---LMK 398
RH HV D A F K L ++ K KT ++ S +A L+
Sbjct: 605 RHASLTLHVYGYDEKQALFAKHLANRMTNFKIDKTRFDVLFESLKRALTNHAFSQPYLLT 664
Query: 399 EH--NIKPEDKVVCFGQLLGMCDHIT 470
+H + DKV QLL +CD +T
Sbjct: 665 QHYNQLLIVDKVWSKEQLLAVCDSVT 690
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +3
Query: 228 RHGIRGSHVENVDATTASFHKCLKEILSRVKSGKTGLGIMVASHNEDTVRYAIQ---LMK 398
RH HV D A F K L ++ K KT ++ S +A L+
Sbjct: 664 RHASLTLHVYGYDEKQALFAKHLANRMTNFKIDKTRFDVLFESLKRALTNHAFSQPYLLT 723
Query: 399 EH--NIKPEDKVVCFGQLLGMCDHIT 470
+H + DKV QLL +CD +T
Sbjct: 724 QHYNQLLIVDKVWSKEQLLAVCDSVT 749
>Z68752-3|CAE54905.1| 888|Caenorhabditis elegans Hypothetical
protein T12G3.2c protein.
Length = 888
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +3
Query: 171 SGGRXCAWRLYRAGASTRCRHGIRGSHVENVDATTASFHKCLKEILSRVKSGKTGLGIMV 350
+GG C ++ A T R H+E +D KCLK+ L + + I+
Sbjct: 638 TGGTICF--TVKSLAHTLDPRSSRPIHLEPLDLKRLQ-QKCLKDYLRDIADAEKVKYILT 694
Query: 351 ASHNEDTVRYAIQLMKEHNIKPED 422
A+ + ++ +KE +KPE+
Sbjct: 695 ANEEVINIESLLESLKELGVKPEN 718
>Z68752-2|CAE54904.1| 912|Caenorhabditis elegans Hypothetical
protein T12G3.2b protein.
Length = 912
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +3
Query: 171 SGGRXCAWRLYRAGASTRCRHGIRGSHVENVDATTASFHKCLKEILSRVKSGKTGLGIMV 350
+GG C ++ A T R H+E +D KCLK+ L + + I+
Sbjct: 638 TGGTICF--TVKSLAHTLDPRSSRPIHLEPLDLKRLQ-QKCLKDYLRDIADAEKVKYILT 694
Query: 351 ASHNEDTVRYAIQLMKEHNIKPED 422
A+ + ++ +KE +KPE+
Sbjct: 695 ANEEVINIESLLESLKELGVKPEN 718
>Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical
protein T12G3.2a protein.
Length = 928
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +3
Query: 171 SGGRXCAWRLYRAGASTRCRHGIRGSHVENVDATTASFHKCLKEILSRVKSGKTGLGIMV 350
+GG C ++ A T R H+E +D KCLK+ L + + I+
Sbjct: 638 TGGTICF--TVKSLAHTLDPRSSRPIHLEPLDLKRLQ-QKCLKDYLRDIADAEKVKYILT 694
Query: 351 ASHNEDTVRYAIQLMKEHNIKPED 422
A+ + ++ +KE +KPE+
Sbjct: 695 ANEEVINIESLLESLKELGVKPEN 718
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 252 VENVDATTASFHKCLKEILSRVKSGKTGLGIMVASHNEDTVRYAIQ 389
+EN D T S K + +V+SG+ I AS+N+D +IQ
Sbjct: 10776 IENADQTGMSIQDLNKSMKKKVESGEATGQINDASNNKDADELSIQ 10821
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 252 VENVDATTASFHKCLKEILSRVKSGKTGLGIMVASHNEDTVRYAIQ 389
+EN D T S K + +V+SG+ I AS+N+D +IQ
Sbjct: 10776 IENADQTGMSIQDLNKSMKKKVESGEATGQINDASNNKDADELSIQ 10821
>AC006630-7|AAK68329.1| 99|Caenorhabditis elegans Hypothetical
protein F14H12.7 protein.
Length = 99
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 467 HFSFRSSWLFGLQVVPYGPVVEVLPYLSRRAN 562
HF R SWL L V P P +E RR N
Sbjct: 44 HFRRRMSWLDSLSVTPRNPRIEYANRAHRRDN 75
>Z66522-6|CAH04737.1| 1147|Caenorhabditis elegans Hypothetical
protein F14E5.2b protein.
Length = 1147
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 363 EDTVRYAIQLMKEHNIKPEDKVVCFGQ 443
ED+ R A+ HN+KP ++++C Q
Sbjct: 578 EDSCREALSEFCSHNVKPSEEMMCLQQ 604
>Z66522-5|CAA91405.1| 1149|Caenorhabditis elegans Hypothetical
protein F14E5.2a protein.
Length = 1149
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 363 EDTVRYAIQLMKEHNIKPEDKVVCFGQ 443
ED+ R A+ HN+KP ++++C Q
Sbjct: 578 EDSCREALSEFCSHNVKPSEEMMCLQQ 604
>AC024202-8|AAK93869.2| 816|Caenorhabditis elegans Hypothetical
protein Y71H2B.5 protein.
Length = 816
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 10 ADLLPARHLEDLPRNDEEIQ*GQVPGLQHLPDVLEE 117
++LLP R + RN EE++ GQ+ L HL +VL+E
Sbjct: 21 SNLLPWRKIAKECRNIEELENGQI-DLVHLQNVLKE 55
>Z81064-2|CAB02963.1| 259|Caenorhabditis elegans Hypothetical
protein F16B12.2 protein.
Length = 259
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 222 RCRHGIRGSHVENVDATTASFHKCLKEILSRVKSGKTG 335
RC G G H E A T KC + + + + KTG
Sbjct: 197 RCAVGFTGKHCERKTAKTCLKKKCREGFICIIDNKKTG 234
>AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing
protein protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 331 VLPDLTLLRISLRHLWKDAVVASTFSTWDPRIPWRQRVLAPAR 203
++ D +R+S++H + +A V + WD IP RV+ R
Sbjct: 248 IVSDGHTVRVSMKHGFGNASVDLDYDLWDEVIPEESRVVIGER 290
>AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein
protein 1 protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 331 VLPDLTLLRISLRHLWKDAVVASTFSTWDPRIPWRQRVLAPAR 203
++ D +R+S++H + +A V + WD IP RV+ R
Sbjct: 248 IVSDGHTVRVSMKHGFGNASVDLDYDLWDEVIPEESRVVIGER 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,529,270
Number of Sequences: 27780
Number of extensions: 320003
Number of successful extensions: 932
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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