Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00202
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    57   2e-09
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    28   1.6  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    27   3.7  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    27   3.7  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   8.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 22/43 (51%), Positives = 31/43 (72%)
 Frame = +2

Query: 269 GRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDE 397
           GR I  +L K+++ E +WP LT +K + HWL+ DF+RW DEDE
Sbjct: 80  GRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRWVDEDE 122


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 195 EKKMHEVLIPLYAEVDPKKSCGLTKE 272
           E + +E LIP +A + PK SC L K+
Sbjct: 153 ESRTYEYLIPSFALLPPKPSCPLFKK 178


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 354 WCFFLSLVNEGQYGSSTFSFA-NSTSINLPLLTHSSF*DQLQHKVVLKPRAFFFL 193
           W   + L+N   YG +TF+   NST+++ P  +H      + H+V + P   + L
Sbjct: 50  WPVSIKLLNTALYGLTTFAAQFNSTTMS-PTTSHLVNAYPIGHEVAVLPTCLYIL 103


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 706 AHTSVVSHILAFIKSKLT*LYHNSKTWCFLISNQKAQNILSIITYA*H 563
           A +S + + L F+++K T  + N K W  ++SN   + I +I   + H
Sbjct: 332 ATSSDILNSLKFLRNKFTMKFVNKKNWATVLSNGIKKVIKTITASSRH 379


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 208 CIFFSGSHIPLNVIDLGSMFI 146
           CIFFS + +P  +I L S F+
Sbjct: 329 CIFFSSTKVPCQLIRLPSDFV 349


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 626 PSLTVVVKLG*FRFNKGQNVRN 691
           P L  VV+ G FR NKGQ +RN
Sbjct: 357 PCLISVVRTG-FRSNKGQLIRN 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,010
Number of Sequences: 5004
Number of extensions: 56849
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)