Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00202
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical pr...    51   1e-06
AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine re...    30   1.5  
Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81482-1|CAB03953.2|  208|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical
           protein ZC395.10 protein.
          Length = 175

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = +2

Query: 272 RLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLD 415
           R++E+ + K+     +WP L  +K K HWLKVDF +W+DEDE  +  D
Sbjct: 71  RVVEITVQKKT--PAWWPRLLQNKGKVHWLKVDFGKWKDEDEDDEAED 116



 Score = 36.3 bits (80), Expect = 0.023
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 75  PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDP 245
           P+V WAQR + ++LT  V E +  ++  E   + F+G  + +K  +E  +  + E+DP
Sbjct: 5   PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDP 60


>AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 67 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 541 IVDQQFILYQVIFFFTRARIILFIISTKL 455
           ++ + FIL  +IFF  RA +IL II T L
Sbjct: 70  MISKTFILKNIIFFVIRATVILGIIRTSL 98


>Z95619-4|CAB09113.2|  397|Caenorhabditis elegans Hypothetical
           protein H21P03.2 protein.
          Length = 397

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 254 LWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESGDDLDNMNDMF 433
           L +N G +I+ + A  K+ +     + +  K H    VD + W DE    D++D +N+M+
Sbjct: 118 LEINGGAVIDPVDAGNKIGDAL-KQIETSVKAH---TVDKSNWCDEWIVDDNMDEINEMY 173

Query: 434 SD 439
            D
Sbjct: 174 DD 175


>Z81482-1|CAB03953.2|  208|Caenorhabditis elegans Hypothetical
           protein C40H5.2 protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 284 VLLAKEK--VDEPYWPSLTSDKKKHHWLKVD--FNRWQDEDESGDDLDNMN 424
           V + KE+  + + +W S +S+K   +    +  +NRW +ED+  DDL   N
Sbjct: 123 VRMRKERRGLTQVFWESASSNKMGFYISVPNKHYNRWAEEDDMFDDLPTEN 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,037,661
Number of Sequences: 27780
Number of extensions: 308550
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)