Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00202
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02450.1 68417.m00332 glycine-rich protein similar to several...    39   0.003
At3g03773.1 68416.m00384 expressed protein                             36   0.037
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro...    29   2.4  
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro...    29   2.4  
At4g39740.1 68417.m05626 electron transport SCO1/SenC family pro...    28   7.5  
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ...    28   7.5  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    28   7.5  
At1g60410.1 68414.m06801 F-box family protein contains F-box dom...    28   7.5  
At1g57590.1 68414.m06535 pectinacetylesterase, putative similar ...    28   7.5  
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil...    27   9.9  

>At4g02450.1 68417.m00332 glycine-rich protein similar to several
           proteins containing a tandem repeat region such as
           Plasmodium falciparum GGM tandem repeat protein
           (GB:U27807)
          Length = 241

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 299 EKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDESG 403
           EK +   W  L   KK  H++KVD+++W DED+ G
Sbjct: 80  EKAEPERWNKLLRVKKPPHYVKVDWDKWVDEDDEG 114



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +3

Query: 75  PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSI-TFKGICEPEKKMHEVLIPLYAEVDPK 248
           P V WA+   +IFLT  + + +   +N++P+ +  F     PE  ++E+ + L  +V+ +
Sbjct: 5   PEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKVNVE 64

Query: 249 KS 254
           +S
Sbjct: 65  ES 66


>At3g03773.1 68416.m00384 expressed protein
          Length = 150

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 275 LIEVLLAKEKVDEPYWPSLT-SDKKKHHWLKVDFNRWQDEDE 397
           L  ++ + +K +  +W  L  S++K   ++KVD+N+W DEDE
Sbjct: 70  LRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDE 111



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 75  PSVSWAQRNARIFLTFNV-ECEKPDINIEPKSITFKGICEPEKKMHEVLIPLYAEV--DP 245
           P V WAQR+ +++LT  + + +   +  EP+ +        + +  E  + LY ++  + 
Sbjct: 5   PEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEY 64

Query: 246 KKSCGL 263
           +K+ GL
Sbjct: 65  RKNVGL 70


>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
           protein contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 148

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 290 LAKE--KVDEPYWPSLTSDKKKHHWLKVDFNRWQDED---ESGDDLDNMND 427
           L KE  K+    W S+T D+KK +  K      +DED   E  DD D+  D
Sbjct: 88  LVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEEQADDSDDAED 138


>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
           protein contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 149

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 290 LAKE--KVDEPYWPSLTSDKKKHHWLKVDFNRWQDED---ESGDDLDNMND 427
           L KE  K+    W S+T D+KK +  K      +DED   E  DD D+  D
Sbjct: 89  LVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEEQADDSDDAED 139


>At4g39740.1 68417.m05626 electron transport SCO1/SenC family
           protein similar to SP|P23833 SCO1 protein, mitochondrial
           precursor {Saccharomyces cerevisiae}; contains Pfam
           profile PF02630: SCO1/SenC
          Length = 276

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 141 PDINIEPKSITFKGICEPEKKMHEVLIPLYAEVDPKK 251
           PD+  E   +  K + + E K +E ++P++  +DP++
Sbjct: 149 PDVGPEQLKMMSKAVDKLESKHNEKILPVFVTLDPQR 185


>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
           similar to finger protein pcp1 GB:S48856 from [Solanum
           tuberosum]  contains Pfam domain, PF00096: Zinc finger,
           C2H2 type
          Length = 513

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 506 LLLHQSSNHPFHYLHQ----IECSYLCPKTCHSYCLNRLHF 396
           LL+HQS++HP H+ HQ    I  S     + +   +N LHF
Sbjct: 249 LLIHQSASHPHHH-HQTQPTINVSSSSSSSHNHNIINSLHF 288


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 132 CEKPDINIEPKSITFKGICEPEKKMHEVLIPL 227
           CEKP   +E       G CE +K+  ++++P+
Sbjct: 852 CEKPKQQVESVGDCKSGHCEKKKQAEDIVVPV 883


>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 129 ECEKPDINIEPKSITFKGICE--PEK-KMHEV 215
           EC+ P + I+  S+ F  IC+  PE  K+H +
Sbjct: 223 ECDNPKVEIDSPSLEFMSICDKKPESLKIHRI 254


>At1g57590.1 68414.m06535 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 423

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 458 IECSYLCPKTCHSYCLNR 405
           I+C+Y C KTCH+    R
Sbjct: 406 IDCAYPCDKTCHNLVFRR 423


>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
           to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
           (Mutarotase) from Acinetobacter calcoaceticus; contains
           Pfam profile PF01263 Aldose 1-epimerase
          Length = 490

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 338 DKKKHHWLKVDFNRWQDEDESGDDLDNMNDMFSDKD 445
           D+KKH   K D +   D+D+S DD D+ +D   D D
Sbjct: 112 DEKKHKDKKKDGH--NDDDDSDDDTDDDDDDDDDDD 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,412
Number of Sequences: 28952
Number of extensions: 278831
Number of successful extensions: 843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)