Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00201
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0103 + 1082077-1082167,1083037-1085477 137 7e-33
02_04_0017 + 18937774-18937864,18938505-18940945 137 7e-33
01_06_0662 + 30987187-30987277,30987825-30990214 133 1e-31
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 132 3e-31
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 105 5e-23
03_05_0511 + 25056018-25059107 67 1e-11
02_04_0148 - 20198407-20201424 56 4e-08
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 33 0.29
04_01_0330 - 4369326-4370852 30 2.1
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 28 8.3
07_03_0698 - 20765305-20768526 28 8.3
02_01_0386 + 2799022-2799293,2801419-2803000,2803351-2803404 28 8.3
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 137 bits (332), Expect = 7e-33
Identities = 62/84 (73%), Positives = 71/84 (84%)
Frame = +2
Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
LNEIKDSVVAGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA
Sbjct: 657 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYA 716
Query: 437 CLLTAQPRLMEPVYLCEIQCPEVA 508
LTA+PRL+EPVYL EIQ PE A
Sbjct: 717 SQLTAKPRLLEPVYLVEIQAPENA 740
Score = 116 bits (278), Expect = 2e-26
Identities = 54/111 (48%), Positives = 78/111 (70%), Gaps = 5/111 (4%)
Frame = +3
Query: 18 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 197
+SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D A+KIWC
Sbjct: 577 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 636
Query: 198 FGPEGTGPNILVDCSKGVQTSMKLRTLL-----WLDSSGPLRKELWLKRIC 335
FGPE TGPN++VD KGVQ +++ + W G L +E ++ IC
Sbjct: 637 FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN-MRGIC 686
Score = 107 bits (258), Expect = 6e-24
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDH
Sbjct: 742 GGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDH 801
Query: 691 WQVL 702
W ++
Sbjct: 802 WDMM 805
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 137 bits (332), Expect = 7e-33
Identities = 62/84 (73%), Positives = 71/84 (84%)
Frame = +2
Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
LNEIKDSVVAGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA
Sbjct: 657 LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYA 716
Query: 437 CLLTAQPRLMEPVYLCEIQCPEVA 508
LTA+PRL+EPVYL EIQ PE A
Sbjct: 717 SQLTAKPRLLEPVYLVEIQAPENA 740
Score = 116 bits (278), Expect = 2e-26
Identities = 54/111 (48%), Positives = 78/111 (70%), Gaps = 5/111 (4%)
Frame = +3
Query: 18 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 197
+SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D A+KIWC
Sbjct: 577 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 636
Query: 198 FGPEGTGPNILVDCSKGVQTSMKLRTLL-----WLDSSGPLRKELWLKRIC 335
FGPE TGPN++VD KGVQ +++ + W G L +E ++ IC
Sbjct: 637 FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN-MRGIC 686
Score = 107 bits (258), Expect = 6e-24
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDH
Sbjct: 742 GGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDH 801
Query: 691 WQVL 702
W ++
Sbjct: 802 WDMM 805
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 133 bits (321), Expect = 1e-31
Identities = 63/86 (73%), Positives = 72/86 (83%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRG--VRFNIYDVTLHTDAIHRGGGQIIPTTRRCL 430
LNEIKDSVVAGFQWA+KEG +AEEN+RG + F + DV LH+DAIHRGGGQIIPT RR +
Sbjct: 653 LNEIKDSVVAGFQWASKEGALAEENMRGRGICFEVCDVILHSDAIHRGGGQIIPTARRVI 712
Query: 431 YACLLTAQPRLMEPVYLCEIQCPEVA 508
YA LTA+PRL+EPVYL EIQ PE A
Sbjct: 713 YAAQLTAKPRLLEPVYLVEIQAPENA 738
Score = 122 bits (294), Expect = 3e-28
Identities = 56/104 (53%), Positives = 75/104 (72%), Gaps = 5/104 (4%)
Frame = +3
Query: 18 LSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWC 197
+SKSPNKHNRL+M+A+PM +GLPE IDEGR+ PRDD K R++ L+E++ +D A+KIWC
Sbjct: 573 MSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 632
Query: 198 FGPEGTGPNILVDCSKGVQTSMKLRTLL-----WLDSSGPLRKE 314
FGPE TGPNI+VD KGVQ +++ + W G L +E
Sbjct: 633 FGPETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 676
Score = 101 bits (241), Expect = 7e-22
Identities = 44/64 (68%), Positives = 53/64 (82%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT+ LR+ T GQAFP VFDH
Sbjct: 740 GGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTSTLRAATSGQAFPLFVFDH 799
Query: 691 WQVL 702
W++L
Sbjct: 800 WEML 803
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 132 bits (319), Expect = 3e-31
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +2
Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
L+EIKDSVVAGFQWA+KEG +AEEN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +YA
Sbjct: 667 LSEIKDSVVAGFQWASKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYA 726
Query: 437 CLLTAQPRLMEPVYLCEIQCPEVA 508
LTA PRLMEP+Y +IQ P+ A
Sbjct: 727 AQLTASPRLMEPMYQVDIQVPKTA 750
Score = 94.3 bits (224), Expect = 8e-20
Identities = 52/132 (39%), Positives = 79/132 (59%), Gaps = 13/132 (9%)
Frame = +3
Query: 18 LSKSPNKHNRLFMKAQPMP-DGLPED-------IDEGRVNPRDDFKTRARYLTEKYEYDV 173
+SKSPNKHNRL+M+A+P+ + L +D ID+ R+ P+DD K R + L+E++ +D
Sbjct: 579 MSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKDDIKERGKILSEEFGWDK 638
Query: 174 TEARKIWCFGPEGTGPNILVDCSKGVQTSMKLRTLL-----WLDSSGPLRKELWLKRICV 338
A+KIW FGPE GPN+LVD KGVQ +++ + W G L +E ++ +C
Sbjct: 639 DLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWASKEGALAEEN-MRGVCF 697
Query: 339 VLDSTSMM*HSI 374
L ++ SI
Sbjct: 698 ELCDVTLHSDSI 709
Score = 86.6 bits (205), Expect = 2e-17
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
G +YGVLN R G + EES+ GTP+ ++ YLPV +SF FT LR+ T GQAFPQC+F H
Sbjct: 752 GNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKLRAETSGQAFPQCIFHH 811
Query: 691 WQVL 702
WQ +
Sbjct: 812 WQTM 815
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 105 bits (251), Expect = 5e-23
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = +2
Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
LN +KDS+V GFQW A+EG + +E +R V+F I + + + +HRGGGQIIPT RR +Y+
Sbjct: 783 LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYS 842
Query: 437 CLLTAQPRLMEPVYLCEIQCP 499
L A PRLMEPVY EIQ P
Sbjct: 843 AFLMANPRLMEPVYYIEIQTP 863
Score = 84.6 bits (200), Expect = 7e-17
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +1
Query: 517 IYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQ 696
IY VL+RRRGHV + GTP+++VKA+LPV ESFGF DLR +T GQAF VFDHW
Sbjct: 870 IYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWA 929
Query: 697 VLP 705
++P
Sbjct: 930 IVP 932
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/89 (40%), Positives = 53/89 (59%)
Frame = +3
Query: 3 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEA 182
S C +++PNK N++ M A+P+ GL EDI+ G V+ K + ++Y++DV A
Sbjct: 694 SSMKCFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSRQKEITDFFRQRYQWDVLAA 753
Query: 183 RKIWCFGPEGTGPNILVDCSKGVQTSMKL 269
R IW FGPE GPNIL+D + V+ L
Sbjct: 754 RSIWAFGPEKQGPNILLDDTLSVEVDKNL 782
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/65 (47%), Positives = 39/65 (60%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
G Y VL+R+R V +E GT +F V AYLPV ES GF+ +LRS T G A V H
Sbjct: 905 GATYAVLSRKRARVLKEEMQEGTSLFTVHAYLPVAESVGFSNELRSVTAGAASALLVLSH 964
Query: 691 WQVLP 705
W+ +P
Sbjct: 965 WEAIP 969
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Frame = +2
Query: 266 IKDSVVAGFQWAAKEGVMAEENLRGVRFNI--YDVTLHTDAIHRG------GGQIIPTTR 421
+++ +V+GFQ A G + +E + G+ F + Y H+DA + GQ+I +
Sbjct: 815 LRNCIVSGFQLATNAGPLCDEPMWGLVFVVEPYIFCDHSDAANHSEQYNIFSGQVITAVK 874
Query: 422 RCLYACLLTAQPRLMEPVYLCEIQCP 499
++ +PRL+E +Y CE+ P
Sbjct: 875 EACREAVVQNKPRLVEAMYFCELTTP 900
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/65 (41%), Positives = 34/65 (52%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
G +Y VL R V +E GT +F V AYL V ES F+ LR+ T G A F H
Sbjct: 881 GSMYAVLGNCRARVLKEEMQEGTSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFSH 940
Query: 691 WQVLP 705
W+ +P
Sbjct: 941 WETVP 945
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +2
Query: 254 DLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTL---------HTDAIHRGGGQI 406
D +K+S+ GFQ A G + E G+ F + L +D GQI
Sbjct: 786 DPETVKNSIATGFQLATNAGPLCGEPTWGLIFLVKPYILPDSADASNNQSDHYSTFSGQI 845
Query: 407 IPTTRRCLYACLLTAQPRLMEPVYLCEIQCP 499
I R A +L ++PRL+EP+Y CE+ P
Sbjct: 846 ITAVREACQAAILESKPRLVEPMYFCELTTP 876
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 663
G + G +N+R+G + Q +V ++P+N FG++ LRS T G+
Sbjct: 690 GTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYSTALRSMTQGK 738
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 414 VGMIWPPPLWMASVWSVTS 358
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 364 YIIDVESNTTQILFSHNSFLSGPLESSHNRVLN 266
Y I++ I+ S+N L G LES H+R L+
Sbjct: 644 YAINIAHRRVDIMDSNNYNLIGTLESDHHRALS 676
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 332 LRGVRFNIYDVTLHTDAIHRG----GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 493
L G + ++ D+ L D +HRG ++ P +L P+L+E +++C I+
Sbjct: 870 LSGTKASLIDLFLQVDKLHRGLLSLSIRMDPPGNWDAIDAILLRPPKLLESLHICSIR 927
>02_01_0386 + 2799022-2799293,2801419-2803000,2803351-2803404
Length = 635
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 147 LTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQTSMKLRTLLWLDSSGPLR 308
L++ Y DVT R +W P P + S V K+ L SGPLR
Sbjct: 437 LSDTYLLDVTMERPVWREIPASWTPPCRLGHSLSVYDGRKILMFGGLAKSGPLR 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,275,003
Number of Sequences: 37544
Number of extensions: 523298
Number of successful extensions: 1403
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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