Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00201
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   148   4e-36
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   2e-22
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                  82   5e-16
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 67   1e-11
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 33   0.17 
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.52 
SB_44023| Best HMM Match : COX6B (HMM E-Value=6.5)                     29   3.7  
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    29   4.9  
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   29   4.9  
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   6.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_46414| Best HMM Match : Extensin_2 (HMM E-Value=0.31)               28   6.4  
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_54198| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   8.5  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  148 bits (359), Expect = 4e-36
 Identities = 67/84 (79%), Positives = 74/84 (88%)
 Frame = +2

Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
           LNEIKDSVVAGFQWA KEG + +EN+RGVRFNI+DVTLH DAIHRGGGQIIPT RR LYA
Sbjct: 647 LNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIHDVTLHADAIHRGGGQIIPTARRVLYA 706

Query: 437 CLLTAQPRLMEPVYLCEIQCPEVA 508
           C+LTA+P L+EPVY  EIQCPE A
Sbjct: 707 CMLTAKPCLLEPVYSVEIQCPESA 730



 Score =  140 bits (339), Expect = 1e-33
 Identities = 67/110 (60%), Positives = 80/110 (72%), Gaps = 6/110 (5%)
 Frame = +3

Query: 3   SDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEG-RVNPRDDFKTRARYLTEKYEYDVTE 179
           S+Q+CLSKSPNKHNRLFM A P+ + LPEDID+G  +NPR DFK RARYL + Y +DV E
Sbjct: 561 SNQMCLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNE 620

Query: 180 ARKIWCFGPEGTGPNILVDCSKGVQTSMKLRTLL-----WLDSSGPLRKE 314
           ARKIW FGPEGTGPN+LVD SKGVQ   +++  +     W    GPL  E
Sbjct: 621 ARKIWSFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDE 670



 Score =  132 bits (319), Expect = 3e-31
 Identities = 60/65 (92%), Positives = 60/65 (92%)
 Frame = +1

Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
           GGIYGVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLRS TGGQAFPQCVFDH
Sbjct: 732 GGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLRSKTGGQAFPQCVFDH 791

Query: 691 WQVLP 705
           WQVLP
Sbjct: 792 WQVLP 796


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  102 bits (245), Expect = 2e-22
 Identities = 43/81 (53%), Positives = 56/81 (69%)
 Frame = +2

Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
           LN +KDS++ GFQWA +EG + +E +R V+F I D  +  + IHRGGGQIIPT RR  Y+
Sbjct: 627 LNTVKDSIIQGFQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYS 686

Query: 437 CLLTAQPRLMEPVYLCEIQCP 499
             L A PRLMEP +  E+Q P
Sbjct: 687 AFLMATPRLMEPYFFVEVQAP 707



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 33/63 (52%), Positives = 48/63 (76%)
 Frame = +1

Query: 517 IYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQ 696
           +Y VL RRRGHV +++ V G+P++ +KA++P  +SFGF  DLR++T GQAF   VF HWQ
Sbjct: 714 VYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQ 773

Query: 697 VLP 705
           ++P
Sbjct: 774 IVP 776



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 34/74 (45%), Positives = 48/74 (64%)
 Frame = +3

Query: 15  CLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIW 194
           C +++PNK N++ M A+P+  GL EDI+  +V    + K    +   KY++D+  AR IW
Sbjct: 542 CFAETPNKKNKVTMIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIW 601

Query: 195 CFGPEGTGPNILVD 236
            FGPE TGPNILVD
Sbjct: 602 AFGPENTGPNILVD 615


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 33/63 (52%), Positives = 48/63 (76%)
 Frame = +1

Query: 517 IYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQ 696
           +Y VL RRRGHV +++ V G+P++ +KA++P  +SFGF  DLR++T GQAF   VF HWQ
Sbjct: 24  VYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQ 83

Query: 697 VLP 705
           ++P
Sbjct: 84  IVP 86


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 29/64 (45%), Positives = 40/64 (62%)
 Frame = +1

Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
           G +Y V+ RR G V  E    G+ +F V+A LPV ESFGF+ ++R  T G A PQ +F H
Sbjct: 428 GRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSEEIRKRTSGLANPQLMFSH 487

Query: 691 WQVL 702
           W+ +
Sbjct: 488 WEAI 491



 Score = 34.3 bits (75), Expect = 0.098
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 180 ARKIWCFGPEGTGPNILVD 236
           A  IW FGP GTGPNIL++
Sbjct: 179 ADHIWAFGPRGTGPNILLN 197


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 663
           G +   +NRR G V       G   F + A +P+N+ FG+  +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 347 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 481
           FN   V L    + R   +I+PT RR  +  LLT+     +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570


>SB_44023| Best HMM Match : COX6B (HMM E-Value=6.5)
          Length = 269

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 575 VHLCS--LLRPTYLSMSRSVLLPICVPTPADRPSRSAYSTI 691
           VH C   +LRP Y+S+S + LL  CV      P+    S +
Sbjct: 127 VHRCEEEVLRPVYMSLSETDLLKRCVRGKTQNPNECINSLV 167


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 12  LCLSKSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 122
           + L K  N H+   LF K + +P  L ED++EG V   D
Sbjct: 241 MLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 30  PNKHNRLFMKAQPMPDGLPEDIDEGRVNPRD 122
           PN  N  F+KA P+ DG   D + G +  RD
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRD 443


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 692 QWSNTHCGKACPPVLE--RKSAVKPNDSL 612
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 554  SKSPRWQVHLCSLLRPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSS 703
            +K P +   L SL  P  +  S S  L    P+P  +PS    S I +S+
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQST 3123


>SB_46414| Best HMM Match : Extensin_2 (HMM E-Value=0.31)
          Length = 469

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 577 YLPPGTLRKRDHDVCSAHRKYHPSYFRTLNFTKIYRLHETGLS 449
           Y P G L+ R +   +   +Y+PS+  T+    +  +H  G++
Sbjct: 44  YYPSGNLQSRFYPSGNPQSRYYPSWKSTVQELPLLEIHSPGIT 86


>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 115  PAMTSRLALGILQKSTNTMLPKPVRFGALAPRVPA 219
            PA     + GI++ ST  ++P P+R   + P VPA
Sbjct: 1109 PAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPA 1143


>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 450 AVSRHAYKHLLVVGMIWPPPLWMA 379
           A+ +H   HL  +  +WP   WMA
Sbjct: 13  ALRKHQCSHLFTIKRVWPVTRWMA 36


>SB_54198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +3

Query: 201 GPEGTGPNILVDCSKGVQTSMKLRTLLWLDSSGPLRKELWLKRICVVLDSTSMM*HSIL- 377
           GP+G  P +L +C+  +   +K      LD +G L +E  +  +C +         SI  
Sbjct: 21  GPDGFHPRVLKECAPVISPILKQIFQKPLD-AGNLPREWCIANVCPIHKKGDRSLASIYR 79

Query: 378 -MPSIEVVAKSFQQLEDACTHV 440
            +P   V+ K  + +   C+H+
Sbjct: 80  PIPLTSVICKILEHI--VCSHI 99


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
 Frame = +3

Query: 66  PMPDGLPEDIDEGR----VNPR 119
           P+PDG+ E+IDEG+    +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,826,115
Number of Sequences: 59808
Number of extensions: 568400
Number of successful extensions: 1549
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)