Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00201
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 151 6e-37
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 151 6e-37
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 98 6e-21
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 98 6e-21
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 4.3
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 28 7.5
U55856-3|AAA98022.2| 472|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical pr... 27 9.9
U64836-6|AAG24056.2| 201|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 27 9.9
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 27 9.9
AC024201-12|AAL27266.1| 544|Caenorhabditis elegans Suppressor o... 27 9.9
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 151 bits (365), Expect = 6e-37
Identities = 66/84 (78%), Positives = 76/84 (90%)
Frame = +2
Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
LNEIKDSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA
Sbjct: 666 LNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYA 725
Query: 437 CLLTAQPRLMEPVYLCEIQCPEVA 508
+LTA+PRL+EPVYL EIQCPE A
Sbjct: 726 SVLTAEPRLLEPVYLVEIQCPEAA 749
Score = 146 bits (354), Expect = 1e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +3
Query: 3 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEA 182
S+Q+CLSKSPNKHNRL AQPMPDGL +DI+ G VN RD+FK RA+ L EKYEYDVTEA
Sbjct: 581 SNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEA 640
Query: 183 RKIWCFGPEGTGPNILVDCSKGVQ 254
RKIWCFGP+GTGPN+L+D +KGVQ
Sbjct: 641 RKIWCFGPDGTGPNLLMDVTKGVQ 664
Score = 143 bits (347), Expect = 9e-35
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
GGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH
Sbjct: 751 GGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 810
Query: 691 WQVLP 705
WQVLP
Sbjct: 811 WQVLP 815
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 151 bits (365), Expect = 6e-37
Identities = 66/84 (78%), Positives = 76/84 (90%)
Frame = +2
Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
LNEIKDSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA
Sbjct: 666 LNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYA 725
Query: 437 CLLTAQPRLMEPVYLCEIQCPEVA 508
+LTA+PRL+EPVYL EIQCPE A
Sbjct: 726 SVLTAEPRLLEPVYLVEIQCPEAA 749
Score = 143 bits (347), Expect = 9e-35
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
GGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH
Sbjct: 751 GGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 810
Query: 691 WQVLP 705
WQVLP
Sbjct: 811 WQVLP 815
Score = 140 bits (340), Expect = 7e-34
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +3
Query: 3 SDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEA 182
S+Q+CLSKSPNKHNRL AQPMPDGL +DI+ G V+ RD+FK RA+Y EKYEY VTEA
Sbjct: 581 SNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEA 640
Query: 183 RKIWCFGPEGTGPNILVDCSKGVQ 254
RKIWCFGP+GTGPN+L+D +KGVQ
Sbjct: 641 RKIWCFGPDGTGPNLLMDVTKGVQ 664
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 97.9 bits (233), Expect = 6e-21
Identities = 40/81 (49%), Positives = 57/81 (70%)
Frame = +2
Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
L+ +++S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 763 LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 822
Query: 437 CLLTAQPRLMEPVYLCEIQCP 499
L A PRLMEP Y E+ P
Sbjct: 823 AFLMATPRLMEPYYTVEVVAP 843
Score = 78.2 bits (184), Expect = 5e-15
Identities = 32/63 (50%), Positives = 45/63 (71%)
Frame = +1
Query: 517 IYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQ 696
+Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F HWQ
Sbjct: 850 VYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQ 909
Query: 697 VLP 705
++P
Sbjct: 910 LVP 912
Score = 68.9 bits (161), Expect = 3e-12
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +3
Query: 15 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIW 194
C +++PNK N++ M A+P+ L EDI+ V + + + KY +D+ AR IW
Sbjct: 678 CFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIW 737
Query: 195 CFGPEGTGPNILVD 236
FGP+ TGPNIL+D
Sbjct: 738 AFGPDTTGPNILLD 751
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 97.9 bits (233), Expect = 6e-21
Identities = 40/81 (49%), Positives = 57/81 (70%)
Frame = +2
Query: 257 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 436
L+ +++S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 638 LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 697
Query: 437 CLLTAQPRLMEPVYLCEIQCP 499
L A PRLMEP Y E+ P
Sbjct: 698 AFLMATPRLMEPYYTVEVVAP 718
Score = 78.2 bits (184), Expect = 5e-15
Identities = 32/63 (50%), Positives = 45/63 (71%)
Frame = +1
Query: 517 IYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQ 696
+Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F HWQ
Sbjct: 725 VYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQ 784
Query: 697 VLP 705
++P
Sbjct: 785 LVP 787
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +3
Query: 15 CLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIW 194
C +++PNK N++ M A+P+ L EDI+ V + + + KY +D+ AR IW
Sbjct: 553 CFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIW 612
Query: 195 CFGPEGTGPNILVD 236
FG + TGPNIL+D
Sbjct: 613 AFGLDTTGPNILLD 626
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/64 (40%), Positives = 35/64 (54%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 690
G ++ VL++R+ V E T +F V + +PV ESF F LR T G A Q F H
Sbjct: 771 GKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSH 830
Query: 691 WQVL 702
WQV+
Sbjct: 831 WQVI 834
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/51 (43%), Positives = 26/51 (50%)
Frame = +1
Query: 550 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVL 702
V E T +F V + +PV ESF F LR T G A Q F HWQV+
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVI 645
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 705 REDLPMVEYALREGLSAGVGTQIGSKTERLIDR*VGLNNE 586
+ED+ +EY + E ++ +GTQ+ KT +D G ++
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVDEFGGYGDD 271
>Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical
protein C46F11.2b protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 264 KLRTLLWLDSSGPLRKELWLKRICVVLDST 353
K++TL+W PL KEL L+R+ V D +
Sbjct: 256 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 285
>Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical
protein C46F11.2a protein.
Length = 473
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 264 KLRTLLWLDSSGPLRKELWLKRICVVLDST 353
K++TL+W PL KEL L+R+ V D +
Sbjct: 270 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 299
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 547 DHDVCSAHRKYHPSYFRTLNFTKIYRLHETGLSS*QTCVQASSSCWNDL 401
+HD S HR++ F ++F L+ T ++ +T V W D+
Sbjct: 216 EHDGASRHRQHLVRKFDPMHFKSFDHLNSTSVNETETTVATWQDQWEDV 264
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 547 DHDVCSAHRKYHPSYFRTLNFTKIYRLHETGLSS*QTCVQASSSCWNDL 401
+HD S HR++ F ++F L+ T ++ +T V W D+
Sbjct: 216 EHDGASRHRQHLVRKFDPMHFKSFDHLNSTSVNETETTVATWQDQWEDV 264
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +3
Query: 54 MKAQPMPDGLPEDIDEGRVNP---RDDFKTRARYLTEKYEYDVTEARKI 191
++ P P PE R NP RDD + ++ E+ VTE R I
Sbjct: 87 IQIHPAPIAGPESTSSFRTNPEENRDDEEDNVEETDQEIEFPVTEERSI 135
>U55856-3|AAA98022.2| 472|Caenorhabditis elegans Hypothetical
protein F31E8.5 protein.
Length = 472
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 207 EGTGPNILVDCSKGVQTSMKLRTLLWLDSSGPLRKELW 320
E T NI V + G M RTLLW D + + +W
Sbjct: 423 ESTSFNIHVIKAPGCDIEMDTRTLLWNDYNAAVPTNMW 460
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 511 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 663
G + L +R + G I +A P+++ FG+T++LRS T G+
Sbjct: 659 GNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELRSLTEGK 707
>Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical
protein R06F6.4 protein.
Length = 429
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 323 EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 454
+ NL +++ TLH +HR IP R CLY C L AQ
Sbjct: 309 KRNLCEKLLDLFQDTLHDHNVHR-----IPVLR-CLYICSLAAQ 346
>U64836-6|AAG24056.2| 201|Caenorhabditis elegans Hypothetical
protein F10G2.1 protein.
Length = 201
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 15 CLSKSPNKHNRLFMKAQPMPDGLPEDIDE 101
C K NK++ + P PD + E+ DE
Sbjct: 116 CSEKLENKNSTCYQNWDPFPDAIDEETDE 144
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 227 PGGL-LQRSSDLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDA 382
PG L L ++ + ++++DS+ A KE ++E+N F D L DA
Sbjct: 137 PGALALMKNGEFSKLRDSITAILSSLPKEITLSEKNACKEAFRALDQLLIRDA 189
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 227 PGGL-LQRSSDLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDA 382
PG L L ++ + ++++DS+ A KE ++E+N F D L DA
Sbjct: 137 PGALALMKNGEFSKLRDSITAILSSLPKEITLSEKNACKEAFRALDQLLIRDA 189
>AC024201-12|AAL27266.1| 544|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform b protein.
Length = 544
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 227 PGGL-LQRSSDLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDA 382
PG L L ++ + ++++DS+ A KE ++E+N F D L DA
Sbjct: 137 PGALALMKNGEFSKLRDSITAILSSLPKEITLSEKNACKEAFRALDQLLIRDA 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,108
Number of Sequences: 27780
Number of extensions: 407755
Number of successful extensions: 1109
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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