Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00201
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.92 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 242 GAIHQDVGAGTLGAKAPNLTGFGNIVFV 159
           G  H  V AG +GA+ P+   +GN V V
Sbjct: 897 GINHGPVTAGVIGARKPHYDIWGNTVNV 924


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 230 GGLLQRSSDLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDV 364
           G + Q   +L     +++ GF   A + +  E N +GV    Y+V
Sbjct: 517 GFITQSDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYNV 561


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 229 RMLGPVPSGPKHQILRASVTSYSYFSVRY 143
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 229 RMLGPVPSGPKHQILRASVTSYSYFSVRY 143
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 366  HSILMPSIEVVAKSFQQLEDACTHVC*LLSPV 461
            HS+L  +  VVA S   + +  T++  +L PV
Sbjct: 939  HSVLHSAQSVVASSASNVTNVTTNLTTILPPV 970


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 33  NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 167
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 33  NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 167
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 201 GPEGTGPNILVDCSKGV 251
           GP   GP+ ++D + GV
Sbjct: 294 GPNSQGPSSVIDTNTGV 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,005
Number of Sequences: 438
Number of extensions: 5449
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)