Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00200
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   4.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   6.0  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 256 EEPGQAMDKPPEPKPNLIDKLVIIFAETKTH 348
           + PG     P +  P+L   ++  FA  K H
Sbjct: 534 KRPGAGKFTPEDINPSLCTHIIYAFATLKDH 564


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 240 THLHLRRTWPSYGQTPRT*TQPNRQACNNFCRNKNT*SSIHIAGIHESST 389
           T L  +R  P++ Q+P T T P+       C+  ++ SS  +A   + ST
Sbjct: 74  TQLQPQRLAPTHLQSPNTQTHPSAS-----CKYADSTSSTGVASPQDLST 118


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 534 PAHSHGSCLAELLRS*CNC 478
           P  ++GSC+  +    CNC
Sbjct: 114 PCRNNGSCVDRIADFECNC 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,223
Number of Sequences: 336
Number of extensions: 4303
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)