Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00200
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   2.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   2.9  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    27   3.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   5.0  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   6.6  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   8.8  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   8.8  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 388  PNELYRRLLPAMLFVLTFVTVMTMLLIYM 474
            P+  Y+RL+  +LF     T++T+LL+++
Sbjct: 954  PSNFYKRLIALLLFCWICSTLVTVLLVFV 982


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 564 IAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGE 668
           I+Y++ L      K  DV+TTPT+ V V++   GE
Sbjct: 83  ISYLKLLRHPHIIKLYDVITTPTDIVMVIEYAGGE 117


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 661 LERNCTMAHLWSG 699
           L+ NCT+A LWSG
Sbjct: 126 LQHNCTLADLWSG 138


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 698 PLHKCAIVQFLSKNGIQNLHLLCRCGNNILRFGTS 594
           P    +++  L + G  +   +C   +NI+RFG++
Sbjct: 277 PTEVASVISTLMEQGFWSFEAICIYSDNIIRFGSN 311


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +3

Query: 516 TRDYELARIGQGSAALIAYVRQLHLTARS-KPQDVVTTPTEQVKVLDSIFGEELYN---G 683
           T +  L +I  G  + ++Y+    +  R  KP +++ T   QVK+ D     EL N   G
Sbjct: 178 TGERPLGKIAFGVLSGLSYLHDRKIIHRDIKPSNILLTSKGQVKLCDFGVSGELVNSLAG 237

Query: 684 TF 689
           TF
Sbjct: 238 TF 239


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 283 PPEPKPNLIDKLVIIFAETKTHSPRFTLPAFMKAPPNELYRR 408
           PP+    L+DKLV  F E++  +P F +       P   Y R
Sbjct: 440 PPQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSPLAKYHR 481


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 152 ISGLCPFFVFFLMQGIENKVIMAEKTDQDNPPP 250
           I  L P FVF     I+ +V+  ++   +N PP
Sbjct: 438 IQNLPPLFVFNARSVIDKEVVPEQEKSAENQPP 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,749
Number of Sequences: 5004
Number of extensions: 65728
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)