Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00200
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 31 1.3
04_04_0554 + 26206715-26206780,26206870-26206968,26207054-262072... 30 2.3
04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871 30 2.3
07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646 29 3.0
07_01_0930 + 7822669-7823265,7823368-7823466,7823563-7823783,782... 29 3.0
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 29 4.0
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 29 4.0
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 29 5.2
04_01_0243 - 3193065-3193436 29 5.2
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 28 6.9
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 28 9.2
07_03_1642 - 28319790-28321445 28 9.2
05_03_0297 - 11911699-11911772,11911987-11912072,11912245-119123... 28 9.2
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 28 9.2
>07_03_1512 +
27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 528 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
E + QGS ++ Y+ + AR P+D+ T Q K L+ + E Y
Sbjct: 454 EFRALNQGSRSVTEYLHDFNRLARYAPEDIRTDEERQEKFLEGLNDELSY 503
>04_04_0554 +
26206715-26206780,26206870-26206968,26207054-26207274,
26207489-26207558,26207690-26207769,26207974-26208038,
26208414-26208607
Length = 264
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 140 YKKNISGLCPFFVFFLMQGIENKVIMAE----KTDQDNPPPPEKNLAKLW 277
YK + G F + QGI N ++ A+ K+D+D P PP A LW
Sbjct: 151 YKGVLYGSVGFVCGIIGQGIANMIMTAKRSVKKSDEDIPVPPLIKSAALW 200
>04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871
Length = 398
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 489 RSATVPLNMT--RDYELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIF 662
R A VP + + E + QG+ + Y+ + + AR +P+DV T +Q K L +
Sbjct: 98 RKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYEPEDVRTDAEKQEKFLAGL- 156
Query: 663 GEELYN 680
+EL N
Sbjct: 157 DDELTN 162
>07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646
Length = 429
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 546 QGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
QGS + Y+ + + AR P+DV T Q K L+ + E Y
Sbjct: 342 QGSRTVTEYLHEFNRLARYAPEDVRTDEERQEKFLEGLNDELSY 385
>07_01_0930 +
7822669-7823265,7823368-7823466,7823563-7823783,
7824319-7824388,7824493-7824572,7825373-7825437,
7826476-7826669
Length = 441
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 140 YKKNISGLCPFFVFFLMQGIENKVIMAE----KTDQDNPPPPEKNLAKLW 277
+K + G FF + QGI N ++ A+ K+D D P PP + LW
Sbjct: 328 FKGILYGTVGFFCGLVGQGIANLIMTAKRSVKKSDDDVPVPPLLKTSALW 377
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 528 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
E + QGS ++ Y+ + + AR P+DV Q K L+ + E Y
Sbjct: 351 EFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLEGLNDELSY 400
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 477 HSCIRSATVPLNMT--RDYELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVL 650
HS R A VP + + E + QG+ + Y+ + + AR P+DV T +Q K L
Sbjct: 168 HS-FRKAQVPDGVVAQKKREFRALHQGNRMVTEYLHEFNRLARYTPEDVRTDAEKQEKFL 226
Query: 651 DSIFGEELYN 680
+ +EL N
Sbjct: 227 AGL-DDELTN 235
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 528 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
E + QGS ++ Y+ + + AR P+DV Q K L+ + E Y
Sbjct: 152 EFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNGEERQEKFLEGLNDELSY 201
>04_01_0243 - 3193065-3193436
Length = 123
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +3
Query: 489 RSATVPLNMT--RDYELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKV---LD 653
R A VP + + E + QG+ + Y+ + + AR P+D+ T +Q K LD
Sbjct: 20 RKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAPEDIRTDAEKQEKFMAGLD 79
Query: 654 SIFGEELYNGTFVEW 698
+L +G + ++
Sbjct: 80 DELTNQLISGDYADF 94
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 569 LCQTTTFDCSFQTSRCCYHTYRAGEGF 649
L Q T C C+H+Y AGEG+
Sbjct: 28 LHQAPTSPCQAPRPTSCFHSYAAGEGY 54
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 528 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
E + QGS ++ Y+ + + AR P+DV Q K L + E Y
Sbjct: 373 EFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGLNDELSY 422
>07_03_1642 - 28319790-28321445
Length = 551
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 467 IKSIVMTVTNVKTKSIAGSNRRYNSLGGAFMNAGNVNRGLCVF 339
I + +K+K+++G Y+S+ A+ AGNV R VF
Sbjct: 229 ITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVF 271
>05_03_0297 -
11911699-11911772,11911987-11912072,11912245-11912332,
11912592-11912719,11913540-11913961,11931803-11932423
Length = 472
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 528 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
E + QGS ++ Y+ + + AR P+DV Q K L + E Y
Sbjct: 155 EFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGLNDELSY 204
>01_06_0873 +
32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +2
Query: 551 LGSIDRLCQT---TTFDCSFQTSRCCYHTYRAGEGFGFHFWRGIVQWHICGVDGFWWTMA 721
L ++DR + +T + S SR T +G+ FH + GV+ W +A
Sbjct: 581 LAALDRAIHSPHASTQEVSASVSRLSRDT--SGQYSDFHILSSLNSQPFTGVEPIWDQIA 638
Query: 722 KHQLSGIST 748
H L GIS+
Sbjct: 639 AHHLEGISS 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,774,000
Number of Sequences: 37544
Number of extensions: 456092
Number of successful extensions: 1297
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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