Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00200
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 30 2.3
SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_59080| Best HMM Match : RVT_1 (HMM E-Value=1.2e-35) 28 7.1
SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34) 28 7.1
SB_37650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_13918| Best HMM Match : RVT_1 (HMM E-Value=5.2e-07) 28 7.1
SB_51607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34) 28 7.1
SB_55622| Best HMM Match : AT_hook (HMM E-Value=3.2) 28 9.4
SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44) 28 9.4
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 456 DALNLHGHSCIRSATVPLNMTRDYELARIGQGSAALIAYVRQL 584
DALN+H + I+ T+P + R + + GS +AY+ L
Sbjct: 394 DALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPL 436
>SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 335 KQKHIVLDSHCRHS*KLHLMSCTDDCY 415
K H L CRHS ++C+DDC+
Sbjct: 492 KSDHTALKGGCRHSRWPRRITCSDDCF 518
>SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 310 DKLVIIFAETKTHSPRFTLPAFMKAPPNELYR-RLLPAMLFV---LTFVTVMTMLLIYMD 477
D L++I A T RF L + PP++ + R A +FV + FV T++ +Y+
Sbjct: 149 DVLLVIMAVAVT---RFLLRGQINPPPSQQQQWRFQDAKMFVGIIVLFVVPYTLISVYLI 205
Query: 478 TVALGAQQFR*T 513
A+G QF T
Sbjct: 206 LDAIGVVQFHFT 217
>SB_59080| Best HMM Match : RVT_1 (HMM E-Value=1.2e-35)
Length = 318
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 537 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
R G+G+ +I RQ+ + + QD+ TT + K D++ E L+
Sbjct: 67 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGLW 113
>SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
Length = 470
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 537 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
R G+G+ +I RQ+ + + QD+ TT + K D++ E L+
Sbjct: 126 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGLW 172
>SB_37650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 537 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
R G+G+ +I RQ+ + + QD+ TT + K D++ E L+
Sbjct: 112 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGLW 158
>SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 537 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
R G+G+ +I RQ+ + + QD+ TT + K D++ E L+
Sbjct: 61 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGLW 107
>SB_13918| Best HMM Match : RVT_1 (HMM E-Value=5.2e-07)
Length = 278
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 537 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
R G+G+ +I RQ+ + + QD+ TT + K D++ E L+
Sbjct: 27 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGLW 73
>SB_51607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 537 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
R G+G+ +I RQ+ + + QD+ TT + K D++ E L+
Sbjct: 8 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGLW 54
>SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
Length = 425
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 537 RIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGEELY 677
R G+G+ +I RQ+ + + QD+ TT + K D++ E L+
Sbjct: 67 RAGRGTVDMIFAARQIQEKSVEQNQDLYTTFVDLTKAFDTVSREGLW 113
>SB_55622| Best HMM Match : AT_hook (HMM E-Value=3.2)
Length = 257
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 79 ELLFIVSHKNY*YTHKFS*VVQEKHKWFMSLFCVFFNARYRKQSDNGRKDR 231
+LLF+ + + Y Y VV+ H+W F A+Y K+ +G +R
Sbjct: 110 DLLFLPTDRGYKYALTVVDVVESFHRWLAQR---LFRAQYSKELASGETNR 157
>SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44)
Length = 850
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 79 ELLFIVSHKNY*YTHKFS*VVQEKHKWFMSLFCVFFNARYRKQSDNGRKDR 231
+LLF+ + + Y Y VV+ H+W F A+Y K+ +G +R
Sbjct: 662 DLLFLPTDRGYKYALTVVDVVESFHRWLAQR---LFRAQYSKELASGETNR 709
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,857,570
Number of Sequences: 59808
Number of extensions: 514535
Number of successful extensions: 1464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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