Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00199
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    40   4e-04
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   2.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.6  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   6.3  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   6.3  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   8.4  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   8.4  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
 Frame = +1

Query: 64  MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATG--C----ESNLFGSSGSCDA 225
           MG+ +  H+  +R + CA C  +L  +  L+S  + G  G  C      N+       + 
Sbjct: 1   MGRYYPVHLK-SRCYVCAKCKTHLAFKGHLLSHDYRGKNGPACLFKRVENVIEMEPKTEQ 59

Query: 226 NRTSHGA*--CFCKNCGTKLGWVYEFATEENQRYKEGRVILE 345
             T         C  C T +GW Y  + E +Q++K+G  ILE
Sbjct: 60  MSTGRFIVRHIHCCRCHTYIGWKYVSSYEPSQKFKDGHYILE 101


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 251  HHAPCDVLLASHDPELPNRLDSQPVAPVN 165
            H   C V +A+ DPEL  + + QP   VN
Sbjct: 1199 HLNTCPVGIATQDPELRKKFEGQPEHVVN 1227


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = -2

Query: 278  SFVPQFLQKHHAPCDVLLASHDPELPNRLDSQPVAPVNRVLINSERFVRLTSHDAHENSR 99
            +F P+F+ K+H  C V L          L S  + P+     N +    L S  +  N  
Sbjct: 2197 TFTPRFVFKNHLDCTVSLREFGSSKVLHLPSNELIPM-MYFSNPQEIALLLSLPSSNNHW 2255

Query: 98   VPPI*SRNI 72
              P  ++N+
Sbjct: 2256 TSPFLAQNV 2264


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 14  FNFQINLSVLTKLNFKKWVKYFLIILEERDYF 109
           FN  I  S +TK+NF +  KY + + + + +F
Sbjct: 163 FNSSILFSSITKINFSRGYKYRIQLTDGKIWF 194


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 253 FCKNCGTKLGWVY 291
           FCKNCGT L + Y
Sbjct: 70  FCKNCGTTLYFAY 82


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/43 (20%), Positives = 24/43 (55%)
 Frame = -2

Query: 305 SVANSYTQPSFVPQFLQKHHAPCDVLLASHDPELPNRLDSQPV 177
           S+A +   P F+ +  +++  PC+  ++  + E+P  +  +P+
Sbjct: 191 SIAGTERAPLFLSENFRENLCPCESCISLRNLEMPMLVAEEPI 233


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 331 SLPCIFDSLQ*QIHIPNPASYHSSYKNITHHV 236
           SL C F     Q+ +P P S   +Y  + H V
Sbjct: 378 SLVCDFTDGVSQVFVPTPPSIEEAYHKLLHRV 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,501
Number of Sequences: 5004
Number of extensions: 47864
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)