Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00199
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0358 - 17948460-17948687,17949442-17949534                       55   7e-08
07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635     54   9e-08
11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153     48   8e-06
10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031     44   1e-04

>12_02_0358 - 17948460-17948687,17949442-17949534
          Length = 106

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
 Frame = +1

Query: 94  GTRLFSCASCDVNLTNRSELISTRFTGATGCESNLFGSS-----GSCDANRTSHG----A 246
           G R++SC +C  ++    ++IS  F G  G  + LF  +     G+ +  +   G    A
Sbjct: 6   GPRVYSCCNCRNHVCLHDDIISKAFQGRNG-RAFLFSHAMNVVVGAKEDRQLMTGLHTVA 64

Query: 247 *CFCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 369
             +C +C   LGW YE A EE Q+YKEG+ I E++ + + +
Sbjct: 65  DIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 105


>07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635
          Length = 110

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
 Frame = +1

Query: 64  MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATG----CESNLFGSSGSCDANR 231
           MG +F++ + G ++F C  C V+  +   ++S  F G  G     +S +  S G  +   
Sbjct: 1   MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60

Query: 232 TSHGA*C----FCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 357
              G       +C  C   LGW YE A  E+Q+YKEG+ ILE+ ++
Sbjct: 61  LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMM 106


>11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153
          Length = 123

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 18/39 (46%), Positives = 28/39 (71%)
 Frame = +1

Query: 253 FCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESD 369
           +C++C   LGW YE A EE+Q+YKEG+ I E+A + + +
Sbjct: 84  YCRDCREVLGWKYERAFEESQKYKEGKFIFEKAKIVKEN 122


>10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031
          Length = 119

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +1

Query: 253 FCKNCGTKLGWVYEFATEENQRYKEGRVILERA 351
           +C  C   LGW YE A EE+++YKEG+ ILE+A
Sbjct: 80  YCSCCQQILGWRYEKAYEESEKYKEGKFILEKA 112



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 182 VVNLIYSEVQDRVMLTGRHMVRDVF 256
           VVN+     +DR ++TG H V+D++
Sbjct: 56  VVNISLGPNEDRYLMTGLHTVKDIY 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,698,689
Number of Sequences: 37544
Number of extensions: 253384
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)