Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00199
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44)       49   4e-06
SB_23989| Best HMM Match : Yippee (HMM E-Value=2.8e-09)                43   2e-04
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 

>SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44)
          Length = 972

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +1

Query: 253  FCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIE 378
            FC+ C T LGW YE A E +Q+YKEG+ I+E A + + +G E
Sbjct: 931  FCECCKTTLGWKYEHAFEISQKYKEGKYIIEMAHMIKDNGWE 972


>SB_23989| Best HMM Match : Yippee (HMM E-Value=2.8e-09)
          Length = 93

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 253 FCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 357
           +C  C T +GW Y  A EE ++YK G+ ILERA +
Sbjct: 25  YCNKCATYVGWKYIDAYEEKEKYKVGKFILERAKI 59


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 121 CDVNL-TNRSELISTRFTGATGCESNLFGS--SGSCDANRTSHGA 246
           CDVN  +N S     + TGA  C SN +G+     C++N +SH A
Sbjct: 707 CDVNCNSNSSHFTCNKTTGARVCHSNWYGTYCDVYCNSNSSSHFA 751


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,931,187
Number of Sequences: 59808
Number of extensions: 318468
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)