Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00199
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038604-4|AAO38680.1|  134|Caenorhabditis elegans Hypothetical ...    66   3e-11
AF038604-3|AAB92012.1|  161|Caenorhabditis elegans Hypothetical ...    66   3e-11
Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical pr...    65   4e-11
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z96047-8|CAC42278.1|  507|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AF038604-4|AAO38680.1|  134|Caenorhabditis elegans Hypothetical
           protein B0546.4b protein.
          Length = 134

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 41/106 (38%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
 Frame = +1

Query: 64  MGKIFLDHIGGT-RLFSCASCDVNLTNRSELISTRFTGATGCESNLFGSS-----GSCDA 225
           MG+ F    G    L+ C  C+  LT   EL S  FTG+TG  + LF  +     G C+ 
Sbjct: 1   MGRQFAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTG-PATLFKRAWNVVYGRCEH 59

Query: 226 NRTSHG----A*CFCKNCGTKLGWVYEFATEENQRYKEGRVILERA 351
            + + G       FC  C  KLGW+YE A  E+Q YKE +VI+E A
Sbjct: 60  RKMTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENA 105


>AF038604-3|AAB92012.1|  161|Caenorhabditis elegans Hypothetical
           protein B0546.4a protein.
          Length = 161

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 41/106 (38%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
 Frame = +1

Query: 64  MGKIFLDHIGGT-RLFSCASCDVNLTNRSELISTRFTGATGCESNLFGSS-----GSCDA 225
           MG+ F    G    L+ C  C+  LT   EL S  FTG+TG  + LF  +     G C+ 
Sbjct: 1   MGRQFAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTG-PATLFKRAWNVVYGRCEH 59

Query: 226 NRTSHG----A*CFCKNCGTKLGWVYEFATEENQRYKEGRVILERA 351
            + + G       FC  C  KLGW+YE A  E+Q YKE +VI+E A
Sbjct: 60  RKMTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENA 105


>Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical
           protein F37A8.5 protein.
          Length = 137

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
 Frame = +1

Query: 61  KMGKIFLDHI-GGTRLFSCASCDVNLTNRSELISTRFTGATGCESNLFGS-----SGSCD 222
           K  K F  ++  G R +SC  C  NL   +ELIS  F G+ G ++ LF +      G  +
Sbjct: 18  KKQKTFQHYLPAGDRCYSCIHCRANLAAHAELISKSFQGSQG-KAYLFNAVVNVGCGPAE 76

Query: 223 ANRTSHG----A*CFCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEE 381
                 G    A  +C+ C T LGW YE A E +Q+YKEG+ I+E A + + +G +E
Sbjct: 77  ERVLLTGLHAVADIYCEICKTTLGWKYEHAFESSQKYKEGKFIIELAHMVKDNGWDE 133


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 23/46 (50%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = +1

Query: 259 KNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEEI-QVN 393
           K+C  +LGW+YE A  +N++YKEG VILER  +TE +   +I Q+N
Sbjct: 5   KSCRAQLGWMYELAPNDNEKYKEGSVILERMNITEREAFSKISQMN 50


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 184 CESNLFGSSGSCDANRTSHGA*CFCKNCGTKLGWVYEFATE 306
           C +N  GSSG C      + A C  + C TK+  V +F+++
Sbjct: 169 CRNNGIGSSGRCSCPPGLYSAHCEARTCVTKIDSVVDFSSQ 209


>Z96047-8|CAC42278.1|  507|Caenorhabditis elegans Hypothetical
           protein DY3.4b protein.
          Length = 507

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
 Frame = +2

Query: 8   GQFNFQINLSVLTK-LNFKKWVKYFLIILEERDYFHAHHAMSILRIV-PN**VRDLLELQ 181
           G  N    L  +TK LN   + K    + +E  +  A  A  +++ V PN  V+  ++  
Sbjct: 79  GSTNCANILEWITKMLNNGGYHKMKPFVYKEAPFTRAFRASKVMKNVDPN--VKRNIQTS 136

Query: 182 VVNLIYSEVQDRVMLTGRHMVRDVFVRTV-VRSWV-GYMNLLLKRIKDTRK 328
           +VN + S V    ++  R ++  + ++   V  W  GY+N+L K IKD ++
Sbjct: 137 IVNNLKSGVHWWALMALRQVMIPIVIKEERVLLWRDGYLNILTKEIKDFKQ 187


>Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical
           protein DY3.4a protein.
          Length = 561

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
 Frame = +2

Query: 8   GQFNFQINLSVLTK-LNFKKWVKYFLIILEERDYFHAHHAMSILRIV-PN**VRDLLELQ 181
           G  N    L  +TK LN   + K    + +E  +  A  A  +++ V PN  V+  ++  
Sbjct: 133 GSTNCANILEWITKMLNNGGYHKMKPFVYKEAPFTRAFRASKVMKNVDPN--VKRNIQTS 190

Query: 182 VVNLIYSEVQDRVMLTGRHMVRDVFVRTV-VRSWV-GYMNLLLKRIKDTRK 328
           +VN + S V    ++  R ++  + ++   V  W  GY+N+L K IKD ++
Sbjct: 191 IVNNLKSGVHWWALMALRQVMIPIVIKEERVLLWRDGYLNILTKEIKDFKQ 241


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -3

Query: 349 LVPILLSLPCIFDSLQ*QIHIPNPASYHSSYKNIT 245
           ++P+++SLP +  S +    IP P+S+ S++  +T
Sbjct: 248 VIPVIVSLPLLLLSFEFYFGIPMPSSFGSTWYALT 282


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -3

Query: 349 LVPILLSLPCIFDSLQ*QIHIPNPASYHSSYKNIT 245
           ++P+++SLP +  S +    IP P+S+ S++  +T
Sbjct: 244 VIPVIVSLPLLLLSFEFYFGIPMPSSFGSTWYALT 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,055
Number of Sequences: 27780
Number of extensions: 256537
Number of successful extensions: 627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)