Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00198
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    26   0.35 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.6  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -3

Query: 417 SNKQIDILNILGV*LFLSNYHIGFLVL------WTIIHKRMVALTTKDLQVLF 277
           S  Q+ + N+L + L+L+ YH+   ++      W+ + + ++ L +KDL   F
Sbjct: 62  SGIQLVVRNLLDISLYLNAYHVFVTMMTLKRHKWSTLFEILLKLESKDLSRTF 114


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 572  FYSATSFRMWKDLMSHY 622
            F S+T    WKDL+  Y
Sbjct: 1227 FLSSTEILFWKDLLDKY 1243


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 572  FYSATSFRMWKDLMSHY 622
            F S+T    WKDL+  Y
Sbjct: 1227 FLSSTEILFWKDLLDKY 1243


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 572  FYSATSFRMWKDLMSHY 622
            F S+T    WKDL+  Y
Sbjct: 1227 FLSSTEILFWKDLLDKY 1243


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 572  FYSATSFRMWKDLMSHY 622
            F S+T    WKDL+  Y
Sbjct: 1227 FLSSTEILFWKDLLDKY 1243


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 372 KVKLLKCSGCQFV 410
           K+K  KC  C FV
Sbjct: 198 KIKTFKCKQCDFV 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,055
Number of Sequences: 336
Number of extensions: 3841
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)