Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00198
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 54 2e-08
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 32 0.072
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 30 0.29
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 29 0.88
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 2.7
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 4.7
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 6.2
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 26 6.2
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 6.2
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 25 8.2
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 270 TSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLE-KVKLLKCSGCQFVYYCGRSCQKDAW 446
T I G +++ ++ L S C C E KVK +C+ C+ ++YC + CQK W
Sbjct: 21 TDNIPIGKIIIRKRVDILSLDSANLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADW 80
Query: 447 GDHKWECPNLK 479
HK EC L+
Sbjct: 81 PFHKLECKALQ 91
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.072
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 387 KCSGCQFVYYCGRSCQKDAWGDHKWEC 467
KC C+ YC + CQ AW H C
Sbjct: 497 KCRRCRRTKYCSKECQHQAWPGHSRWC 523
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 345 GNRCDNCLEKVKLLKC--SGCQFVYYCGRSCQKDAWGDHK 458
G C+N ++++ KC G + Y+CG+ C +++W HK
Sbjct: 12 GIDCNNEADRLQCPKCLNDGVKS-YFCGQECFRNSWNIHK 50
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 28.7 bits (61), Expect = 0.88
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 360 YHIGFLVLWTIIHKRMVALTTKDLQVLFRKLYF*ISPHF 244
Y IGFL+L+TI V L+ L + F YF + HF
Sbjct: 347 YAIGFLILFTIGGLTGVILSNSVLDIAFHDTYF-VVAHF 384
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 40 CGRVFSKYNVTDIENCIFRTPGSE---RTAYKISYFNSTRSRLFKN 168
CG++ KY + + IFR GS R I N +RS+LF +
Sbjct: 85 CGKIICKYCLKEAPGFIFRLQGSIKVCRPCASILVNNYSRSQLFNH 130
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 31 SDDCGRVFSKYNVTDIENCIFR---TPGSERTAYKI 129
SDD +V S N +E CI + P S++ +K+
Sbjct: 309 SDDWAKVASHVNTKSVEECILKFLNLPSSDKALFKM 344
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 361 LSHRFPCSLDDNT*ANGCSDNKRSPGFISEVVFLNFSSFPQPRH 230
LSH +L ++ C + R +I+ + LN + FP P+H
Sbjct: 86 LSHASSPNLSNSQDEAECLPSDRQQDYINPSLHLNRTVFPTPQH 129
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +3
Query: 435 KDAWGDHKWECPNLKRVAPKVIPDGHECWQRSS 533
+ +W KWE + + P++ PD ++ ++S+
Sbjct: 372 ESSWSGRKWEFYSYAKEFPELFPDAYKLNEKST 404
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 435 SDKIFHSNKQIDILNILGV*LFLSNYHI-GFLVLWTIIHKRMVALTTK 295
S K F+SN +D + LFL N+ + G +V++ KR+ ALT K
Sbjct: 517 SVKRFYSNSFVDFQRQEAISLFLGNFTVHGKIVVFG--EKRLQALTEK 562
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 50 SFLNIM*PILRIVFLERQVASEPLTKFPTSTALEVDYLK 166
S+ M ++RI+ E S+P+T F ++ EVD+ K
Sbjct: 289 SYQRRMRDLVRIISQENYEYSDPVTSFISALYTEVDFEK 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,495
Number of Sequences: 5004
Number of extensions: 64943
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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