Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00198
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056...    68   9e-12
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046...    44   9e-05
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559...    40   0.003
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472...    38   0.011
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959     33   0.17 
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813...    33   0.23 
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942     31   1.2  
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199...    29   2.8  
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692           29   2.8  
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731     29   2.8  
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745...    29   3.7  
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438...    29   4.9  
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    28   6.5  

>03_05_0841 -
           28104977-28105142,28105439-28105502,28105586-28105655,
           28105743-28105852,28106217-28106295,28106610-28106691,
           28106791-28106879,28107351-28107425,28107728-28107862,
           28108018-28108163,28108380-28108491
          Length = 375

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 24/61 (39%), Positives = 39/61 (63%)
 Frame = +3

Query: 285 PGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDHKWE 464
           PG++++S++P+A   +    G+ CDNC     L KCS C+  +YCG +CQ++ W  H+ E
Sbjct: 37  PGEVVISQEPYASTPNKISVGSNCDNCFASRNLRKCSVCRVAWYCGSACQREEWKLHQLE 96

Query: 465 C 467
           C
Sbjct: 97  C 97


>06_03_0968 -
           26402154-26403834,26404322-26404383,26404473-26404682,
           26404776-26404860,26405461-26405618,26405745-26405868,
           26405955-26406123,26406202-26406287,26406379-26406467,
           26406564-26406735,26407820-26408193
          Length = 1069

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 345 GNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW-GDHKWECPNLKRVAP 491
           G  C  C   +   KCSGC+ V YC + CQ   W   HK++C  +K+ +P
Sbjct: 102 GEPCAAC-GYIATKKCSGCKRVRYCSQGCQSKHWQSGHKFKCKQMKKSSP 150


>10_08_0571 -
           18855317-18855541,18855667-18855747,18855849-18855963,
           18856061-18856224,18856307-18856540,18856626-18856781,
           18857113-18857244,18857850-18857984,18858071-18858457,
           18858708-18858826,18858914-18859124,18859268-18859339,
           18859542-18859628,18859993-18860127,18860240-18860368
          Length = 793

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 246 NEEKFRNTTSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVK--LLKCSGCQFVYYC 419
           N+ +  ++ ++I P  L+ +E P A ++    +   C  C  +    ++ C  C    YC
Sbjct: 226 NKGRGMSSPNDISPASLIHAEDPLAVIIMKSCRDTHCHYCFSEAPADVVVCPSCTIPIYC 285

Query: 420 GRSCQKDAWG 449
              CQ+ A G
Sbjct: 286 SNRCQEKAIG 295


>07_03_0378 +
           17446311-17446514,17446814-17446927,17447124-17447242,
           17447595-17447641,17447720-17447820,17450769-17450840,
           17451290-17451403,17451495-17451500,17451501-17451611
          Length = 295

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 387 KCSGCQFVYYCGRSCQKDAWGDHKWECPNL 476
           +C GC  V YC R+ Q   WG HK EC  L
Sbjct: 53  RCGGCGAVAYCSRAHQTVHWGFHKEECARL 82


>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
          Length = 395

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 387 KCSGCQFVYYCGRSCQKDAWGD-HKWECPNLKR 482
           +CS C  V YC R+CQ   W   HK EC  + R
Sbjct: 341 RCSVCGVVNYCSRACQALHWKTAHKAECTPMDR 373


>02_02_0236 +
           8135641-8135795,8136167-8136557,8136640-8136931,
           8137117-8137271,8137363-8137451,8137623-8137967,
           8139046-8139169,8139424-8139581,8139673-8139757,
           8140094-8140306,8141314-8141375,8141466-8141951,
           8142472-8142568
          Length = 883

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +3

Query: 267 TTSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW 446
           T   I PG  L          S++ + + C  C    K  +CS C+ V YC   CQ   W
Sbjct: 3   TPDVILPGPSLRPMPYMRSAPSARPEYHECATCHGPAKT-RCSRCKSVRYCSGKCQIIHW 61

Query: 447 GD-HKWEC 467
              HK  C
Sbjct: 62  RQGHKQTC 69


>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
          Length = 379

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 372 KVKLLKCSGCQFVYYCGRSCQKDAWG-DHKWEC 467
           K +  +CS C  V YC R+CQ   W   HK  C
Sbjct: 316 KHEFRRCSVCSGVIYCSRACQAMHWKVAHKSAC 348


>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
            27420006-27420123,27420211-27420384,27420633-27420803,
            27420932-27420987,27421125-27421214,27421296-27421444,
            27421640-27421722,27421830-27421958,27422063-27422137,
            27422248-27422416,27422965-27423104,27423191-27423298,
            27423603-27423783,27424445-27424542,27424639-27424728,
            27424881-27425034,27425376-27425431,27425483-27425533,
            27425651-27425732,27425821-27425995,27426748-27426823,
            27426951-27427121,27427198-27427269,27427350-27427454,
            27427948-27428037,27428703-27428908,27428989-27429190,
            27429294-27429473,27429858-27429925,27430005-27430341,
            27430428-27430637,27430765-27431448,27431537-27431940,
            27432495-27432542,27432777-27433023,27433381-27433602,
            27433796-27434026
          Length = 2122

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 497  NP*WARMLAKIINRLNRGDR-HSFRSFYSATSF--RMWKDLMSHYPNLKADKKRMDHFTS 667
            NP + + LAKI N +N GD   S RS Y+  S    +    +   P +  +  ++ H  S
Sbjct: 1595 NPAYRKCLAKITNHINSGDAVTSSRSIYTVGSLINVLGSKALPQLPLIMKNMLQVSHQVS 1654

Query: 668  LC 673
             C
Sbjct: 1655 FC 1656


>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
          Length = 1171

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -1

Query: 521 PAFVPIRDYFWRDSFEIRALPLVISPCI 438
           P FV +RD F    F   ALP  I PCI
Sbjct: 635 PEFVSLRDLFSWMHFSFEALPHSIKPCI 662


>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
          Length = 369

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 387 KCSGCQFVYYCGRSCQKDAW-GDHKWECPNLKR 482
           +CS C    YC R+CQ   W   HK +C  + R
Sbjct: 328 RCSVCGAANYCSRACQALDWKRAHKAQCVPMDR 360


>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
            18993885-18993935,18994674-18994829,18995048-18995123,
            18995317-18995364,18995445-18995489,18995580-18995679,
            18995923-18995968,18996115-18996176,18996257-18996355,
            18996536-18996609,18996721-18996790,18997074-18997162,
            18997327-18997404
          Length = 1220

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 354  CDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDHKWECPNLKRVAPKVIPDGHE-CWQRS 530
            C  C + +KLL+  G  F   C + C K+AW  HK     L  +  +  P+G + C ++ 
Sbjct: 891  CPKCAQ-LKLLR-EGAAF---CTQDCFKEAWSSHKSVHIKLDALTLQQTPEGWQYCLKKG 945

Query: 531  ST 536
             T
Sbjct: 946  RT 947


>03_01_0004 +
           41829-42203,42376-42474,42699-42743,43604-43741,
           43852-44157,44779-45689,45826-46093
          Length = 713

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 357 DNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDH 455
           D  +E + L  C+GC+F    GR    DA GDH
Sbjct: 184 DYFIEVLGLRNCAGCRFYRAEGRGNLWDAKGDH 216


>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +3

Query: 387 KCSGCQFVYYCGRSCQKDAWGD-HKWEC 467
           +C  C+ V YC   CQ   W   HK EC
Sbjct: 133 RCKQCKAVKYCSFKCQIAHWRQGHKNEC 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,296,728
Number of Sequences: 37544
Number of extensions: 372260
Number of successful extensions: 710
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)