Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00198
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11) 95 7e-20
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06) 62 3e-10
SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017) 62 4e-10
SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08) 58 5e-09
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 51 8e-07
SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0) 41 0.001
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15) 39 0.004
SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039) 39 0.005
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 39 0.005
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 38 0.011
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003) 34 0.10
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 34 0.10
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08) 33 0.23
SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11) 31 0.94
SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07) 29 2.9
SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07) 29 2.9
SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
>SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)
Length = 281
Score = 94.7 bits (225), Expect = 7e-20
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = +3
Query: 279 IKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVK-LLKCSGCQFVYYCGRSCQKDAWGDH 455
+K GD +LSEQP Y+LS+ +G RCD CLEK+ L +CS C+F YCG SCQ+ AW H
Sbjct: 26 LKSGDTILSEQPVVYMLSNMLRGQRCDFCLEKLSDLQRCSRCKFARYCGASCQRAAWRIH 85
Query: 456 KWECPNLKRVAPKVIPD 506
K EC LKRV P+V D
Sbjct: 86 KSECERLKRVFPRVPTD 102
>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
Length = 357
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Frame = +3
Query: 249 EEKFRNTTS--EIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKL-LKCSGCQFVYYC 419
EEK R+T + +I GD+LL E+PFA VL ++ + C C + L CS C V YC
Sbjct: 244 EEKGRHTIAARDINIGDVLLVEKPFASVLLQEQSKSHCHQCFVHILAPLPCSYCTTVRYC 303
Query: 420 GRSCQKDAW-GDHKWECPNLKRV 485
C K++W H EC NL+ V
Sbjct: 304 SEKCAKESWDAYHYAECTNLEHV 326
>SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)
Length = 294
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Frame = +3
Query: 249 EEKFRNTTS--EIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKL-LKCSGCQFVYYC 419
EEK R+T + +I GD+LL E+PFA VL ++ + C C + L CS C V YC
Sbjct: 40 EEKGRHTIAARDINIGDVLLVEKPFASVLLQEQSKSHCHQCFVHILAPLPCSYCTTVRYC 99
Query: 420 GRSCQKDAW-GDHKWECPNLKRV 485
C K++W H EC NL+ V
Sbjct: 100 SEKCAKESWDAYHYAECMNLEHV 122
>SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)
Length = 771
Score = 58.4 bits (135), Expect = 5e-09
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +3
Query: 246 NEEKFRNTTSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEK-VKLLKCSGCQFVYYCG 422
N+ +F +SEI+ GD L++E+P++ VL + C+ C + V + C+ C V YC
Sbjct: 295 NQGRFLQASSEIRAGDTLIAEEPYSAVLLPENAKTHCECCYKSLVAPVPCNHCSSVLYCS 354
Query: 423 RSCQKDAWGD-HKWEC 467
+C+ AW H EC
Sbjct: 355 AACRNKAWSQYHHVEC 370
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 324 VLSSKEQGNRCDNC-LEKVKLLKCSGCQFVYYCGRSCQKDAWGDHKWEC 467
V+ ++Q C NC L K++L KC C VYYC R+CQK+ H+ EC
Sbjct: 118 VVEQQQQQRMCANCGLAKIRLSKCGKCLKVYYCSRNCQKEDRKWHRQEC 166
>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 354 CDNCLEKVKLLK-CSGCQFVYYCGRSCQKDAWGDHKWECPNLKRVAPKV 497
C C +K +K CS C +YC + CQ +AWG HK C + + +V
Sbjct: 55 CHKCSQKGGNMKQCSNCLSAWYCSKECQGEAWGSHKKRCTKMAKKTVQV 103
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 387 KCSGCQFVYYCGRSCQKDAWGDHKWECPNLKR 482
KC C YC C+ D HK +C N+ R
Sbjct: 20 KCLRCNIAEYCSAQCRDDNQWRHKVDCDNVSR 51
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 300 LSEQPFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDHKWECPNLK 479
L+ + F + + E C NC K+ KC+ C+ + YC R CQ+ W HK C
Sbjct: 123 LTVEEFDRITAEAENKMPCTNC-GKLGGKKCTACK-IPYCSRKCQQQHWPQHKTTC--TW 178
Query: 480 RVAPKVIPDGH 512
+++ P+ H
Sbjct: 179 KISTTYTPEAH 189
>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1888
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 390 CSGCQFVYYCGRSCQKDAWGDHKWECPNLKR 482
CS C YCG+ CQ WG HK +C N R
Sbjct: 1854 CSACNSRGYCGQKCQLKDWGKHKTDCHNQSR 1884
>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
Length = 537
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 354 CDNCLEKVKLLK-CSGCQFVYYCGRSCQKDAWGDHKWEC 467
C C +K +K C+ C+ V YC RSCQ W HK C
Sbjct: 14 CAVCRQKQNHMKICTRCRGVLYCSRSCQSIHWPKHKVTC 52
>SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039)
Length = 167
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 375 VKLLKCSGCQFVYYCGRSCQKDAWGD-HKWECPNLKRVAPKVIP 503
V+L C+ C+ V+YC +SC+ AW H+ EC + V V+P
Sbjct: 27 VRLSACTRCKEVFYCSKSCKLKAWNSRHREECVRV-TVGKPVVP 69
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 351 RCDNCLE-KVKLLKCSGCQFVYYCGRSCQKDAWGDHKWEC 467
+C+ C V+L KCS C+ YC + C + W HK C
Sbjct: 7 KCEFCYATNVQLQKCSRCKSTMYCSKDCPRSHWKHHKAIC 46
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 375 VKLLKCSGCQFVYYCGRSCQKDAWGD-HKWEC 467
V+L C+ C+ V+YC +SC+ AW H+ EC
Sbjct: 401 VRLSACTRCKEVFYCSKSCKLKAWNSRHREEC 432
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 354 CDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWGDHKWECPNL 476
C C KL CS C+ YC ++CQK HK C ++
Sbjct: 1384 CVFCHRTGKLKTCSNCRVASYCDQTCQKMHLAKHKLLCKSV 1424
>SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003)
Length = 109
Score = 34.3 bits (75), Expect = 0.10
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 381 LLKCSGCQFVYYCGRSCQKDAWG-DHKWEC 467
++ CSGC +YC CQ+ W H+++C
Sbjct: 74 MMACSGCMSKFYCNEICQERDWSLGHQFDC 103
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 34.3 bits (75), Expect = 0.10
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 369 EKVKLLKCSGCQFVYYCGRSCQKDAWGDHKWEC 467
+K C C + YYC R C++ W +HK C
Sbjct: 3533 QKSSFTSCPAC-YTYYCTRECRRAHWREHKKVC 3564
>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
Length = 690
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 354 CDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW-GDHKWEC 467
C+ C +K ++C+ C+ YYCG Q+ W G H+ C
Sbjct: 17 CELC-QKPAFVQCTDCRVTYYCGPEHQRADWLGIHEKIC 54
>SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 31.1 bits (67), Expect = 0.94
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 405 FVYYCGRSCQKDAWGDHKWECPNLKR 482
+V YC SCQK W HK C L +
Sbjct: 352 YVGYCSVSCQKLHWSTHKKHCQRLAK 377
>SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11)
Length = 200
Score = 31.1 bits (67), Expect = 0.94
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 387 KCSGCQFVYYCGRSCQKDAW-GDHKWECPNL 476
KCS C+ V+YC R Q W HK C L
Sbjct: 160 KCSKCKSVFYCSRDHQVFGWKTGHKTACNQL 190
>SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07)
Length = 84
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 378 KLLKCSGCQFVYYCGRSCQKDAWGDHKWEC 467
K+ +C C Y C R CQ W +HK C
Sbjct: 41 KMKRCVRCGETY-CSRGCQTKDWKEHKRIC 69
>SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 378 KLLKCSGCQFVYYCGRSCQKDAW-GDHKWEC 467
+L C GC V YC CQ+ W +H+ C
Sbjct: 116 RLYLCGGCLGVRYCSSLCQRRHWEEEHRRVC 146
>SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07)
Length = 145
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 378 KLLKCSGCQFVYYCGRSCQKDAWGDHKWEC 467
K+ +C C Y C R CQ W +HK C
Sbjct: 102 KMKRCVRCGETY-CSRGCQTKDWKEHKRIC 130
>SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 378 KLLKCSGCQFVYYCGRSCQKDAWGDHKWEC 467
K+ +C C Y C R CQ W +HK C
Sbjct: 107 KMKRCVRCGETY-CSRGCQTKDWKEHKRIC 135
>SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 390 CSGCQFVYYCGRSCQKDAWGDHKWEC 467
C C F +YC C+ W +H+ +C
Sbjct: 137 CKAC-FTHYCSPECRILHWPEHRLDC 161
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 345 GNRCDNCLEKVKLLKC-SGCQFVYYCGRSCQK 437
GN C++CL++ +C S C +CG SCQ+
Sbjct: 1907 GN-CNSCLQQRVHEQCKSKCDRTLFCGHSCQE 1937
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,859,013
Number of Sequences: 59808
Number of extensions: 455915
Number of successful extensions: 1126
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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