Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00198
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ... 78 5e-15
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi... 40 0.001
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 35 0.047
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 33 0.14
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 32 0.33
At5g50450.1 68418.m06247 zinc finger (MYND type) family protein ... 32 0.33
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 32 0.33
At2g19640.2 68415.m02295 SET domain-containing protein contains ... 32 0.33
At2g19640.1 68415.m02294 SET domain-containing protein contains ... 32 0.33
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 31 0.58
At1g70150.1 68414.m08072 zinc finger (MYND type) family protein ... 31 0.77
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 30 1.8
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 30 1.8
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 30 1.8
At1g68030.1 68414.m07772 PHD finger protein-related contains low... 29 3.1
At5g06620.1 68418.m00748 expressed protein 28 5.4
>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
SET domain-containing protein contains Pfam profiles
PF00856: SET domain, PF01753: MYND zinc finger (ZnF)
domain; confirmed by cDNA (Paola Vittorioso--accession
not assigned yet (paola.vittorioso@uniroma1.it)
Length = 480
Score = 78.2 bits (184), Expect = 5e-15
Identities = 31/73 (42%), Positives = 46/73 (63%)
Frame = +3
Query: 267 TTSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW 446
T + +PG+++LS++P+ V ++ +RCD C + L KCS CQ V+YCG SCQK W
Sbjct: 27 TARDFRPGEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEW 86
Query: 447 GDHKWECPNLKRV 485
H+ EC L R+
Sbjct: 87 KLHRDECKALTRL 99
>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 798
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 249 EEKFRNTTSE--IKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKL--LKCSGCQFVYY 416
+EK R SE I+ ++ E+PF+ V+S + C CL ++ + C C Y
Sbjct: 226 KEKGRGMVSECDIEEASVIHVEEPFSVVISKSCRETHCHFCLNELPADTVPCPSCSIPVY 285
Query: 417 CGRSCQKDAWG 449
C SCQ + G
Sbjct: 286 CSESCQIQSGG 296
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 354 CDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW-GDHKWECPNLK 479
C C K KCS C+ V YC +CQ W HK +C +
Sbjct: 64 CSVC-GKATTKKCSRCKSVRYCSAACQTSDWKSGHKLKCKGFR 105
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 372 KVKLLKCSGCQFVYYCGRSCQKDAWG-DHKWECPNLKR 482
K + +CS C V YC R+CQ W HK +C ++R
Sbjct: 314 KHEFRRCSVCGVVNYCSRACQALDWKLRHKMDCAPVQR 351
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 351 RCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAW-GDHKWEC 467
RC CL +CS C+ V YC CQ W HK EC
Sbjct: 56 RCAVCLYPTTT-RCSQCKSVRYCSSKCQILHWRRGHKEEC 94
>At5g50450.1 68418.m06247 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 336
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 387 KCSGCQFVYYCGRSCQKDAW-GDHKWECPNL 476
+CS C V YC R CQ W HK EC L
Sbjct: 278 RCSVCGKVNYCSRGCQALDWRAKHKVECTPL 308
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 387 KCSGCQFVYYCGRSCQKDAWGD-HKWEC 467
KCS C+ V YC CQ+ W H+ C
Sbjct: 71 KCSRCKSVRYCSAECQRSDWSSGHQRNC 98
>At2g19640.2 68415.m02295 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 398
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +3
Query: 279 IKPGDLLLSEQPF----AYVLSSKEQGNRCDNC---LEKVKLLKCSGCQFVYYCGRSCQK 437
++ G ++L E P A+ S CD+C L KC C V +C +C
Sbjct: 31 LRAGQVILRESPLLLYSAFPFLSSSVSPYCDHCFRLLASSAHQKCQSCSLVSFCSPNC-- 88
Query: 438 DAWGDH-KWECPNLKRV 485
+ H W C +L+R+
Sbjct: 89 --FASHTPWLCESLRRL 103
>At2g19640.1 68415.m02294 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 341
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +3
Query: 279 IKPGDLLLSEQPF----AYVLSSKEQGNRCDNC---LEKVKLLKCSGCQFVYYCGRSCQK 437
++ G ++L E P A+ S CD+C L KC C V +C +C
Sbjct: 31 LRAGQVILRESPLLLYSAFPFLSSSVSPYCDHCFRLLASSAHQKCQSCSLVSFCSPNC-- 88
Query: 438 DAWGDH-KWECPNLKRV 485
+ H W C +L+R+
Sbjct: 89 --FASHTPWLCESLRRL 103
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 354 CDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWG-DHKWEC 467
C C K +CS C+ V YC CQ W HK EC
Sbjct: 130 CARCFGPAKT-RCSRCKSVRYCSGKCQIIHWRVAHKDEC 167
>At1g70150.1 68414.m08072 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 387
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 387 KCSGCQFVYYCGRSCQKDAWGDHKWECPNLKRVAPKV 497
+C C V YC S Q W HK EC L+ +V
Sbjct: 19 RCGQCGAVAYCSVSHQISHWSYHKEECERLEEQMRRV 55
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 387 KCSGCQFVYYCGRSCQKDAWGD-HKWEC 467
+CS C+ V YC CQ W HK EC
Sbjct: 84 RCSRCKAVRYCSGKCQIIHWRQGHKDEC 111
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 390 CSGCQFVYYCGRSCQKDAWG-DHKWECPNLKRVA 488
CSGC+ YC Q W HK EC L+ V+
Sbjct: 200 CSGCKNARYCSPKHQALHWRLGHKTECQQLRTVS 233
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +3
Query: 321 YVLSSKEQGNRCDNCLEKVK--LLKCSGCQFVYYCGRSCQKDAWGDH 455
YV KE +C + ++ KC C VYYC CQ+ +H
Sbjct: 227 YVDKVKEDFGKCVSVANNLRWRYWKCHICSQVYYCFTDCQRHILDNH 273
>At1g68030.1 68414.m07772 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 314
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 303 SEQPFAYVLSSKEQGNRCDNCLEKVKLLKCS--GCQFVYY 416
SE +++ S E+ RC NC E KLL CS GC+ + +
Sbjct: 212 SENDGSHLSSPVEKIYRCVNCKESGKLLFCSSDGCEVMVH 251
>At5g06620.1 68418.m00748 expressed protein
Length = 258
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 270 TSEIKPGDLLLSEQPFAYVLSSKEQGNRCDNCLEKVKLLKCSGCQFVYYCGRSCQKDAWG 449
T +I GDL+ + +P S + + C CL+K+ + V YC + CQ+++ G
Sbjct: 59 TRKIGAGDLIHTAKPVVACPSLLKLDSVCYLCLKKLMGSAKFEDRGVSYCSQECQENSKG 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,393,635
Number of Sequences: 28952
Number of extensions: 321394
Number of successful extensions: 782
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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