Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00197
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    29   0.57 
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    27   2.3  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    27   3.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.3  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   7.0  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   7.0  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   9.2  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 79  DEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIKDP*QIELPPDPLA 237
           +E   D   S+   D   E +   YE+ +   KEL  E++ P ++EL P+ LA
Sbjct: 434 EEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEVELQPNELA 486


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 64  DYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKEL 183
           DY   + P P++R    D+  ++    + YE+EK++ +E+
Sbjct: 75  DYNFDNVPPPELRTPTLDSFVVLPAAKDGYEEEKNSPEEV 114


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 19  DPPGCRNSARASSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDN 171
           D P  ++S +    ED    D P P V+  + +  K +      + D +DN
Sbjct: 91  DSPSIKSSVQIEDTEDDMFADSPSPSVK--RQNTGKGISTLTRSFADMQDN 139


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 109 QDDADKMVEPKNE--FYEDEKDNDKELPPEI 195
           QDD D+  +        +DEKDND+E   EI
Sbjct: 345 QDDVDQATDNNTNTILEDDEKDNDEEEEEEI 375


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 109 QDDADKMVEPKNE--FYEDEKDNDKELPPEI 195
           QDD D+  +        +DEKDND+E   EI
Sbjct: 345 QDDVDQATDNNTNTILEDDEKDNDEEEEEEI 375


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  IVDPPGCRNSARASSLEDYRIKDEPDPD 96
           +V   GC  S    ++ DY++++ P PD
Sbjct: 475 VVGHNGCGKSTLLRAIGDYKVENFPSPD 502


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 82  EPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
           +PD D    +++AD+M E  +E  E +++ ++E
Sbjct: 171 QPDADEEEEEEEADEMEEEFDEEGEGDEEEEEE 203


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 82  EPDPDVRISQDDADKMVEPKNEFYEDE 162
           E D ++ + +DD D+ + P  + YE++
Sbjct: 629 ESDSEMDLQEDDFDREMRPPFDIYEED 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,868
Number of Sequences: 5004
Number of extensions: 44023
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)