Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00197
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0848 + 20261635-20261668,20261824-20261824,20261861-202619... 41 0.001
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 37 0.016
06_01_1168 - 9949128-9950621 31 0.58
06_01_1166 + 9931955-9933406 31 0.58
04_04_1388 - 33179270-33180679 31 0.58
06_01_1165 + 9927345-9927749 30 1.8
06_01_1170 - 10002650-10004122 29 2.4
04_04_0340 + 24517562-24520318 29 2.4
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 29 2.4
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 29 3.1
03_03_0276 - 16113073-16113279,16114766-16114873 29 3.1
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502... 28 5.4
09_03_0172 - 13072575-13073800,13075919-13076054 28 7.2
04_03_0213 + 12709396-12709564,12709659-12710217,12710312-127106... 28 7.2
08_02_1074 + 24135988-24137454 27 9.5
07_03_1228 - 25009736-25010965 27 9.5
05_05_0131 - 22600220-22600582,22600849-22601234,22601337-226015... 27 9.5
03_05_0713 - 27070063-27070126,27070202-27070290,27070369-270704... 27 9.5
02_03_0007 - 13875735-13875826,13876217-13877465 27 9.5
02_01_0581 - 4307182-4307358,4307387-4307461,4307559-4307621,430... 27 9.5
>04_03_0848 +
20261635-20261668,20261824-20261824,20261861-20261924,
20262647-20262739,20262818-20262926,20263212-20263261,
20263335-20263425,20263660-20263730,20263979-20264077,
20264241-20264307,20264507-20264592
Length = 254
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
+DE DPD R+ Q DK + +E+YE + DND E
Sbjct: 216 EDELDPDERVDQHTQDKQIHRDDEYYEGDNDNDHE 250
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 36.7 bits (81), Expect = 0.016
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 22 PPGCRNSARASSLEDYRIKDEPDPDVR--ISQDDADKMVEPKNEFYEDEKDNDKELPPEI 195
PP R + +DY ++E D D + +DD +++ E + EF +D+ D+D P +
Sbjct: 107 PPRSRRRRQKDDDDDYEEEEEEDADFDPDVDEDDEEEVDEDEEEFEQDDDDSDDFAPIRV 166
Query: 196 K 198
+
Sbjct: 167 R 167
>06_01_1168 - 9949128-9950621
Length = 497
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +2
Query: 17 WIPRAAGIRHELLPWKITESRTNPILTFVSVRTMLTKWWSPKTSFMKTRKI 169
W P+ A +RH + W +T N ++ V+ + W F+ R +
Sbjct: 358 WAPQLAALRHRAVGWFVTHCGWNSVVEAVAAGVSMLTWPMMADQFVNARLV 408
>06_01_1166 + 9931955-9933406
Length = 483
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 17 WIPRAAGIRHELLPWKITESRTNPILTFVSVRTMLTKWWSPKTSFMKTR 163
W P+ + +RH + W +T N IL V+ + W F+ R
Sbjct: 349 WAPQLSALRHRAVGWFVTHCGWNSILEAVAAGVAMLTWPMVADQFVNAR 397
>04_04_1388 - 33179270-33180679
Length = 469
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 17 WIPRAAGIRHELLPWKITESRTNPILTFVSVRTMLTKWWSPKTSFMKTR 163
W P+ A +RH + W +T N +L V+ + W F+ R
Sbjct: 345 WAPQVAALRHAAVGWFMTHCGWNSVLEAVAAGVPMLAWPMAADQFVNAR 393
>06_01_1165 + 9927345-9927749
Length = 134
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +2
Query: 17 WIPRAAGIRHELLPWKITESRTNPILTFVSVRTMLTKWWSPKTSFMKTRKI 169
W P+ A +RH + W +T S ++ V+ + W F+ R +
Sbjct: 6 WAPQLAALRHRAVGWFVTHSGWISVVEAVAAGVAMLTWPMVADQFVNARLV 56
>06_01_1170 - 10002650-10004122
Length = 490
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/49 (24%), Positives = 20/49 (40%)
Frame = +2
Query: 17 WIPRAAGIRHELLPWKITESRTNPILTFVSVRTMLTKWWSPKTSFMKTR 163
W P+ A +RH + W +T N L ++ + W F+ R
Sbjct: 353 WAPQVAALRHRAVGWFVTHCGWNSTLEALAAGVTMLAWPMVGEQFVNAR 401
>04_04_0340 + 24517562-24520318
Length = 918
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 40 SARASSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYED 159
+AR + E+Y+I + D +V QD D + KNE YE+
Sbjct: 208 AARNNKSENYKILVKIDAEVNCLQDALDLIDRNKNEVYEN 247
>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 55 SLEDYRIK---DEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIKDP 204
+ ED IK DE +R+ + + K V KNE D+ D KE+P K P
Sbjct: 1067 NFEDPEIKSALDEVLEFIRVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQP 1119
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 28 GCRNSARASSLEDYRIKD-EPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
GC SA E+ KD E + + + + + D E +++ E +KDN+KE
Sbjct: 186 GCNGSADKKDKEEETEKDNEKEKEDKEEETEKDNEKEKEDKEEETKKDNEKE 237
>03_03_0276 - 16113073-16113279,16114766-16114873
Length = 104
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 52 SSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIKDP*QIEL 219
SS E Y +E + V + QD+ D +N+ D+ +ND E E D +++L
Sbjct: 42 SSAEQYAQSEEEEEGVEVDQDEGD-----ENDNGSDDGNNDDEDEEESDDEMEVDL 92
>09_02_0587 -
10948888-10949124,10949281-10949393,10949830-10950293,
10951223-10951766,10951902-10951971
Length = 475
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 4 WXRIVDPPGCRNSARASSLEDYRIKDEPDPDVRISQDDADK 126
W +I P C+N + AS++++ + P P ++ + + A+K
Sbjct: 216 WGQIAPDPTCKNLSTASTIKNNSMFSVPSPVMQTAVEAANK 256
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 88 DPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
D D I +D + E N F ED DNDK+
Sbjct: 92 DEDYSIEDEDEELDHEDDNSFDEDISDNDKD 122
>04_03_0213 +
12709396-12709564,12709659-12710217,12710312-12710606,
12710688-12710786,12710864-12711203,12711571-12711812
Length = 567
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 28 GCRNSARASSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIKDP* 207
GCR++ ++ DE + +V + + DK E +E E+E D D+E + P
Sbjct: 388 GCRSTDMVEHAHAHQEGDE-EGEVGDEEGEQDKEAEEGDE--EEEGDEDREEEADELGPS 444
Query: 208 QIELPPD 228
Q+E P+
Sbjct: 445 QLEDAPE 451
>08_02_1074 + 24135988-24137454
Length = 488
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +2
Query: 17 WIPRAAGIRHELLPWKITESRTNPILTFVSVRTMLTKW 130
W P+ +RH + W +T N +L V+ + W
Sbjct: 362 WAPQVEILRHRAVGWFLTHCGWNSVLEAVAAGVAMLAW 399
>07_03_1228 - 25009736-25010965
Length = 409
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIKD 201
E+ ++EP+ +DD ++ E + E + E+D ++E E++D
Sbjct: 340 EEEEEEEEPEEGAEEEEDDEEEDEEEEEEEEDIEEDENEEEEEEVED 386
>05_05_0131 -
22600220-22600582,22600849-22601234,22601337-22601526,
22601636-22601805,22601909-22602053
Length = 417
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +1
Query: 19 DPPGCRNSARASSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
DPP A A S D D S DD D + + E E+E++ D E
Sbjct: 362 DPPAASVPAPAPSASPAPKSDHSDSSSSSSSDDDDDDNDNEEEEGEEEEEEDAE 415
>03_05_0713 -
27070063-27070126,27070202-27070290,27070369-27070428,
27071110-27071215,27071309-27071428,27072340-27072476,
27072561-27072647,27073660-27073956
Length = 319
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 112 DDADKMVEPKNEFYEDEKDNDKELPPEIKDP 204
DD D E E +DE+ +++ELPP +DP
Sbjct: 35 DDGDDGTEEDEEEDDDEEGDEEELPP-AEDP 64
>02_03_0007 - 13875735-13875826,13876217-13877465
Length = 446
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 79 DEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPE 192
DEP P+ +S+ + M+EP +E D++ P +
Sbjct: 4 DEPQPEASVSKIEEPLMIEPLSEPSTSASSIDEKFPEQ 41
>02_01_0581 -
4307182-4307358,4307387-4307461,4307559-4307621,
4307715-4307819,4307917-4308024,4308123-4308260,
4308357-4308446,4308533-4308658,4308728-4308781,
4308865-4308936,4309060-4309167,4309272-4309343,
4309456-4309518,4309747-4309908
Length = 470
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 10 RIVDPPGCRNSARASSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPP 189
RI+DP + + +D ++D +P RI DD ++E E D+D
Sbjct: 241 RILDPSPITRAKISDIFDDKWLQDHCNPSARIENDDDCDVIE------EASTDSDSSHNT 294
Query: 190 EIKD 201
E+K+
Sbjct: 295 EVKE 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,910
Number of Sequences: 37544
Number of extensions: 282671
Number of successful extensions: 829
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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