Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00197
(638 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein. 33 1.1
U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein. 33 1.1
U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3 pro... 33 1.1
BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3 p... 33 1.1
AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3 p... 33 1.1
AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3 p... 33 1.1
AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C ... 33 1.1
Y07969-1|CAA69265.1| 249|Homo sapiens APRIL protein. 32 1.5
Y07569-1|CAA68855.1| 251|Homo sapiens PHAPI2a protein protein. 32 1.5
U70439-1|AAB37579.1| 251|Homo sapiens silver-stainable protein ... 32 1.5
BC019658-1|AAH19658.1| 251|Homo sapiens acidic (leucine-rich) n... 32 1.5
BC013003-1|AAH13003.1| 251|Homo sapiens acidic (leucine-rich) n... 32 1.5
AL354726-2|CAI15261.1| 156|Homo sapiens acidic (leucine-rich) n... 32 1.5
AL354726-1|CAI15260.1| 251|Homo sapiens acidic (leucine-rich) n... 32 1.5
U50079-1|AAC50475.1| 482|Homo sapiens histone deacetylase HD1 p... 31 3.4
D50405-1|BAA08909.1| 482|Homo sapiens RPD3 protein protein. 31 3.4
CR541717-1|CAG46518.1| 482|Homo sapiens HDAC1 protein. 31 3.4
BC000301-1|AAH00301.1| 482|Homo sapiens histone deacetylase 1 p... 31 3.4
AY627042-1|AAT44863.1| 482|Homo sapiens histone deacetylase 1 p... 31 3.4
AL109945-2|CAI22886.1| 482|Homo sapiens histone deacetylase 1 p... 31 3.4
AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens ... 30 6.0
>U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein.
Length = 428
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 52 SSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEI 195
+ L Y DE D + R +++ + P NEFY+ + DNDKE EI
Sbjct: 382 ADLLTYDRTDEADAEERGPEENYSRPEAP-NEFYDGDHDNDKESDVEI 428
>U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein.
Length = 429
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 52 SSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEI 195
+ L Y DE D + R +++ + P NEFY+ + DNDKE EI
Sbjct: 383 ADLLTYDRTDEADAEERGPEENYSRPEAP-NEFYDGDHDNDKESDVEI 429
>U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 52 SSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEI 195
+ L Y DE D + R +++ + P NEFY+ + DNDKE EI
Sbjct: 382 ADLLTYDRTDEADAEERGPEENYSRPEAP-NEFYDGDHDNDKESDVEI 428
>BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 52 SSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEI 195
+ L Y DE D + R +++ + P NEFY+ + DNDKE EI
Sbjct: 382 ADLLTYDRTDEADAEERGPEENYSRPEAP-NEFYDGDHDNDKESDVEI 428
>AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 52 SSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEI 195
+ L Y DE D + R +++ + P NEFY+ + DNDKE EI
Sbjct: 382 ADLLTYDRTDEADAEERGPEENYSRPEAP-NEFYDGDHDNDKESDVEI 428
>AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 52 SSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEI 195
+ L Y DE D + R +++ + P NEFY+ + DNDKE EI
Sbjct: 382 ADLLTYDRTDEADAEERGPEENYSRPEAP-NEFYDGDHDNDKESDVEI 428
>AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C
protein.
Length = 371
Score = 32.7 bits (71), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 52 SSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEI 195
+ L Y DE D + R +++ + P NEFY+ + DNDKE EI
Sbjct: 325 ADLLTYDRTDEADAEERGPEENYSRPEAP-NEFYDGDHDNDKESDVEI 371
>Y07969-1|CAA69265.1| 249|Homo sapiens APRIL protein.
Length = 249
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
E++ +D+ D DV +DD D++ E + EF DE+D D++
Sbjct: 186 EEFDEEDDEDEDVEGDEDD-DEVSEEEEEFGLDEEDEDED 224
>Y07569-1|CAA68855.1| 251|Homo sapiens PHAPI2a protein protein.
Length = 251
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
E++ +D+ D DV +DD D++ E + EF DE+D D++
Sbjct: 188 EEFDEEDDEDEDVEGDEDD-DEVSEEEEEFGLDEEDEDED 226
>U70439-1|AAB37579.1| 251|Homo sapiens silver-stainable protein
SSP29 protein.
Length = 251
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
E++ +D+ D DV +DD D++ E + EF DE+D D++
Sbjct: 188 EEFDEEDDEDEDVEGDEDD-DEVSEEEEEFGLDEEDEDED 226
>BC019658-1|AAH19658.1| 251|Homo sapiens acidic (leucine-rich)
nuclear phosphoprotein 32 family, member B protein.
Length = 251
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
E++ +D+ D DV +DD D++ E + EF DE+D D++
Sbjct: 188 EEFDEEDDEDEDVEGDEDD-DEVSEEEEEFGLDEEDEDED 226
>BC013003-1|AAH13003.1| 251|Homo sapiens acidic (leucine-rich)
nuclear phosphoprotein 32 family, member B protein.
Length = 251
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
E++ +D+ D DV +DD D++ E + EF DE+D D++
Sbjct: 188 EEFDEEDDEDEDVEGDEDD-DEVSEEEEEFGLDEEDEDED 226
>AL354726-2|CAI15261.1| 156|Homo sapiens acidic (leucine-rich)
nuclear phosphoprotein 32 family, member B protein.
Length = 156
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
E++ +D+ D DV +DD D++ E + EF DE+D D++
Sbjct: 107 EEFDEEDDEDEDVEGDEDD-DEVSEEEEEFGLDEEDEDED 145
>AL354726-1|CAI15260.1| 251|Homo sapiens acidic (leucine-rich)
nuclear phosphoprotein 32 family, member B protein.
Length = 251
Score = 32.3 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKE 180
E++ +D+ D DV +DD D++ E + EF DE+D D++
Sbjct: 188 EEFDEEDDEDEDVEGDEDD-DEVSEEEEEFGLDEEDEDED 226
>U50079-1|AAC50475.1| 482|Homo sapiens histone deacetylase HD1
protein.
Length = 482
Score = 31.1 bits (67), Expect = 3.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDND 174
+DE DPD RIS +DK + + EF + E++ +
Sbjct: 396 EDEDDPDKRISICSSDKRIACEEEFSDSEEEGE 428
>D50405-1|BAA08909.1| 482|Homo sapiens RPD3 protein protein.
Length = 482
Score = 31.1 bits (67), Expect = 3.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDND 174
+DE DPD RIS +DK + + EF + E++ +
Sbjct: 396 EDEDDPDKRISICSSDKRIACEEEFSDSEEEGE 428
>CR541717-1|CAG46518.1| 482|Homo sapiens HDAC1 protein.
Length = 482
Score = 31.1 bits (67), Expect = 3.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDND 174
+DE DPD RIS +DK + + EF + E++ +
Sbjct: 396 EDEDDPDKRISICSSDKRIACEEEFSDSEEEGE 428
>BC000301-1|AAH00301.1| 482|Homo sapiens histone deacetylase 1
protein.
Length = 482
Score = 31.1 bits (67), Expect = 3.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDND 174
+DE DPD RIS +DK + + EF + E++ +
Sbjct: 396 EDEDDPDKRISICSSDKRIACEEEFSDSEEEGE 428
>AY627042-1|AAT44863.1| 482|Homo sapiens histone deacetylase 1
protein.
Length = 482
Score = 31.1 bits (67), Expect = 3.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDND 174
+DE DPD RIS +DK + + EF + E++ +
Sbjct: 396 EDEDDPDKRISICSSDKRIACEEEFSDSEEEGE 428
>AL109945-2|CAI22886.1| 482|Homo sapiens histone deacetylase 1
protein.
Length = 482
Score = 31.1 bits (67), Expect = 3.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDND 174
+DE DPD RIS +DK + + EF + E++ +
Sbjct: 396 EDEDDPDKRISICSSDKRIACEEEFSDSEEEGE 428
>AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar
to Nucleolin. ).
Length = 603
Score = 30.3 bits (65), Expect = 6.0
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 16 VDPPGCRNSARASSLEDYRIKD-EPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPE 192
++P + +A A + ED +D E D D +DD D + + E E+E++ KE P +
Sbjct: 113 IEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEDDEDDDEDDEEEEEEEEEEPVKEAPGK 172
Query: 193 IK 198
K
Sbjct: 173 RK 174
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,584,147
Number of Sequences: 237096
Number of extensions: 1654339
Number of successful extensions: 3791
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3746
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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