Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00197
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   1.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.6  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 587 IYHNNIHGNHSTSKIFTLYC*SRSNISTITLFNIFTIKLIPILP*SFDVECNLF 426
           I++NN + N++ +  +  Y  +  N      +NI  I+ IP+ P    + C  F
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQIPV-PVPVPIYCGNF 375


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 266 HSVLLCTCHIARGSGGSS 213
           + +L CT HIA  S GS+
Sbjct: 168 YDILNCTIHIASWSHGSN 185


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 50 ARAEFLQPGGS 18
          A+ EFL PGGS
Sbjct: 66 AKCEFLNPGGS 76


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 402 YPLQSKKHWHYNVFFLHLTDLTQTLY*RFQI 310
           +PL S++ +  +   L   +L+Q  Y  FQI
Sbjct: 277 HPLSSRREFAVSTRILRDENLSQNSYHEFQI 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,084
Number of Sequences: 438
Number of extensions: 3148
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)