Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00197
(638 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44660.1 68416.m04803 histone deacetylase-related / HD-relate... 38 0.004
At3g44490.1 68416.m04782 histone deacetylase-related / HD-relate... 38 0.004
At3g44680.1 68416.m04805 histone deacetylase, putative similar t... 37 0.013
At5g44415.1 68418.m05439 hypothetical protein contains Pfam prof... 30 1.1
At5g02050.1 68418.m00126 mitochondrial glycoprotein family prote... 30 1.1
At4g28960.1 68417.m04137 hypothetical protein contains Pfam prof... 30 1.1
At4g09370.1 68417.m01546 hypothetical protein contains Pfam prof... 30 1.1
At2g23710.1 68415.m02831 hypothetical protein contains Pfam prof... 30 1.1
At5g37490.1 68418.m04515 U-box domain-containing protein similar... 30 1.5
At2g11910.2 68415.m01278 expressed protein 30 1.5
At2g11910.1 68415.m01277 expressed protein 30 1.5
At5g52050.1 68418.m06460 MATE efflux protein-related contains Pf... 28 4.5
At1g23930.1 68414.m03019 hypothetical protein contains Pfam prof... 28 4.5
At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related s... 28 6.0
At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa... 28 6.0
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa... 28 6.0
At5g63740.1 68418.m08000 zinc finger protein-related 27 7.9
At4g38130.1 68417.m05384 histone deacetylase (RPD3A) identical t... 27 7.9
At1g47970.1 68414.m05343 expressed protein 27 7.9
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 27 7.9
>At3g44660.1 68416.m04803 histone deacetylase-related / HD-related
similar to SP|O09106 Histone deacetylase 1 (HD1) {Mus
musculus}
Length = 142
Score = 38.3 bits (85), Expect = 0.004
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDND 174
+DE +PDVR+ Q DK ++ +E+++ + DND
Sbjct: 108 EDEQNPDVRVDQRSRDKQIQRDDEYFDGDNDND 140
>At3g44490.1 68416.m04782 histone deacetylase-related / HD-related
similar to SP|O09106 Histone deacetylase 1 (HD1) {Mus
musculus}
Length = 158
Score = 38.3 bits (85), Expect = 0.004
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDND 174
+DE +PDVR+ Q DK ++ +E+++ + DND
Sbjct: 124 EDEQNPDVRVDQRSRDKQIQRDDEYFDGDNDND 156
>At3g44680.1 68416.m04805 histone deacetylase, putative similar to
histone deacetylase-1 (HD-1) [Gallus gallus] GI:2791684;
contains Pfam profile PF00850: Histone deacetylase
family; identical to cDNA histone deacetylase partial
cds GI:21637258
Length = 426
Score = 36.7 bits (81), Expect = 0.013
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 76 KDEPDPDVRISQDDADKMVEPKNEFYEDEKDND 174
+DE +PDVR Q DK ++ +E+++ + DND
Sbjct: 392 EDEQNPDVRADQRSRDKQIQRDDEYFDGDNDND 424
>At5g44415.1 68418.m05439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 611
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 61 EDYRIKDEPDPD-VRISQDDADKMVEPKNEFYEDEKDNDKE-LPPEI 195
+D KD+ D D + + D D ++P+N +D+ D+D + LPPE+
Sbjct: 101 DDGANKDDGDDDNLPQNMQDGDDDLQPQNMQDDDDDDDDNQPLPPEV 147
>At5g02050.1 68418.m00126 mitochondrial glycoprotein family protein
/ MAM33 family protein low similarity to SUAPRGA1
[Emericella nidulans] GI:6562379; contains Pfam profile
PF02330: Mitochondrial glycoprotein
Length = 267
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 13 IVDPPGCRNSARASSLEDYRIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPE 192
I+D G R ED I+ E D +D ++ EP NE E D D+E +
Sbjct: 107 IIDNSGERTVLLTRKFEDETIQVEVDSVASYDDEDEEEEAEPNNE----EDDEDQESSGK 162
Query: 193 IKDP 204
++ P
Sbjct: 163 VRVP 166
>At4g28960.1 68417.m04137 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 493
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 61 EDYRIKDEPDPD-VRISQDDADKMVEPKNEFYEDEKDNDKE-LPPEI 195
+D KD+ D D + + D D ++P+N +D+ D+D + LPPE+
Sbjct: 69 DDGANKDDGDDDNLPQNMQDGDDDLQPQNMQDDDDDDDDNQPLPPEV 115
>At4g09370.1 68417.m01546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 666
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 61 EDYRIKDEPDPD-VRISQDDADKMVEPKNEFYEDEKDNDKE-LPPEI 195
+D KD+ D D + + D D ++P+N +D+ D+D + LPPE+
Sbjct: 101 DDGANKDDGDDDNLPQNMQDGDDDLQPQNMQDDDDDDDDNQPLPPEV 147
>At2g23710.1 68415.m02831 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287;
this may be a pseudogene; the protein appears slightly
truncated on the 3' end due to intervening stop codon.
Length = 592
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 61 EDYRIKDEPDPD-VRISQDDADKMVEPKNEFYEDEKDNDKE-LPPEI 195
+D KD+ D D + + D D ++P+N +D+ D+D + LPPE+
Sbjct: 101 DDGANKDDGDDDNLPQNMQDGDDDLQPQNMQDDDDDDDDNQPLPPEV 147
>At5g37490.1 68418.m04515 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 435
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 121 DKMVEPKNEFYEDEKDNDKELPPEIKDP*QIELPPDPLAI 240
+K + P + E E +++ +PPE + P I+L DP+ I
Sbjct: 11 EKKITPVLSWPESEPESEITIPPEFQCPISIDLMKDPVII 50
>At2g11910.2 68415.m01278 expressed protein
Length = 168
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 79 DEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIK 198
DE D D DD D+ E + E ++E D+D PP K
Sbjct: 127 DEDDDDEEGDNDDEDEDNEDEEEDDDEEDDDDVRQPPSKK 166
>At2g11910.1 68415.m01277 expressed protein
Length = 168
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 79 DEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIK 198
DE D D DD D+ E + E ++E D+D PP K
Sbjct: 127 DEDDDDEEGDNDDEDEDNEDEEEDDDEEDDDDVRQPPSKK 166
>At5g52050.1 68418.m06460 MATE efflux protein-related contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 505
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 128 WWSPKTSFMKTRKITIRSCHQRLRIHSK*NCLRIPSLYDMC 250
++ K S + KIT +C +R K CL IPS +C
Sbjct: 238 FFEDKLSVNEDEKITEETCEDSVREWKKLLCLAIPSCISVC 278
>At1g23930.1 68414.m03019 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 649
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 61 EDYRIKDEPDPD-VRISQDDADKMVEPKNEFYEDEKDNDKE---LPPEI 195
+D KD+ D D + + D D ++P+N +D+ D+D + LPPE+
Sbjct: 80 DDGANKDDGDDDNLPQNMQDGDDDLQPQNMQDDDDDDDDDDNQPLPPEV 128
>At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related
similar to Chain A, Crystal Structure Of Human
Tyrosyl-Dna Phosphodiesterase (Tdp1) [Homo sapiens]
GI:20150581
Length = 605
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 82 EPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIKDP*QIELPPDP 231
E +P V ++ + VE +++ D++LP I P +LPP P
Sbjct: 530 ESNPSVMKAKQETKDEVEKRSKLVTMTWQGDRDLPEIISLPVPYQLPPKP 579
>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 379
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDAD 123
ED++++DE D D I +DD D
Sbjct: 351 EDFQVEDEEDSDDAIDEDDED 371
>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 379
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDAD 123
ED++++DE D D I +DD D
Sbjct: 351 EDFQVEDEEDSDDAIDEDDED 371
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 79 DEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIKD 201
D+ D D + DD D E +E +D+ D+D E E D
Sbjct: 97 DDDDDDADDADDDEDDDDEDDDEDEDDDDDDDDENDEECDD 137
>At4g38130.1 68417.m05384 histone deacetylase (RPD3A) identical to
SP|O22446 Histone deacetylase (HD) {Arabidopsis
thaliana}
Length = 501
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 70 RIKDEPDPDVRISQDDADKMVEPKNEFYEDEKDNDKELPPEIK 198
R D P+V Q+D DK +P ++ D D+ K +P +K
Sbjct: 392 RPPDTETPEVDEDQEDGDKRWDPDSDM--DVDDDRKPIPSRVK 432
>At1g47970.1 68414.m05343 expressed protein
Length = 198
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 61 EDYRIKDEPDPDVRISQDDAD-KMVEPKNEFYEDEKDND 174
+D K+EP+ V +S DD+D + V+ E DE D+D
Sbjct: 8 DDKNFKEEPEIQV-LSDDDSDEEQVKDVGEEVSDEDDDD 45
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 124 KMVEPKNEFYEDEKDNDKELPPEIKD 201
K + + EF+E EK+ KE+P E K+
Sbjct: 168 KKKKTEGEFFEAEKEEKKEIPQEKKE 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,378,431
Number of Sequences: 28952
Number of extensions: 230369
Number of successful extensions: 709
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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