Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00196
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    29   0.47 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    28   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.4  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.8  

>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 300 IATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTESVIKTT 470
           + +L T+L   +R +SDL  + G+    +I + +N  ++N     ES  +  + SVIK  
Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRM 235

Query: 471 AEKTSSII 494
            ++  S++
Sbjct: 236 FKEHESVL 243


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
 Frame = +2

Query: 266 MESRASPCRR*NRDFENCTAKQDPSK--LGLKT*TWHHGVERDHRGRQSGFEKRQRKPSI 439
           + S +S   + +RD+ +   +++     +G +    H+G ER  R R+   + R+ + S 
Sbjct: 7   LSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESR 66

Query: 440 PKN*ICDKNDRREDVFDHRRHHGGVSSKLGQMRN-----SESFRSIEERV 574
            ++   D+  RRE  +D         S +G+ R+       S RSIE+ +
Sbjct: 67  ERSYREDERPRRERRYDDYEPRSLRYSSVGRSRSPPPSRERSVRSIEQEL 116


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 402 NQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAAC---PASSVRCATRSLSAPSKNA 572
           +  L ++  +    KT S    T  KT+S   G +++    PASS    T S+S+   ++
Sbjct: 709 SSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSS 768

Query: 573 SVRLMKTSRV 602
           S     +S +
Sbjct: 769 SSSFTPSSAI 778


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 575 GSAYENVKGKVASRSNSTQSFDEALRDASGATSPPI 682
           GS+ EN       R+N++ SFD  L D+S  T+P I
Sbjct: 302 GSSIENNFLYTKRRANTSDSFDSVLSDSS--TTPTI 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,335
Number of Sequences: 5004
Number of extensions: 51498
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)