Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00196
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 33 0.16
01_01_1127 + 8930593-8932681,8932812-8933401 33 0.16
02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869... 31 0.64
01_06_1155 - 34957402-34957824 31 1.1
10_08_0520 - 18495118-18498237 30 1.5
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 29 2.6
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218... 29 2.6
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 29 3.4
07_01_0509 + 3792255-3792661,3792745-3792851,3792949-3793043,379... 28 6.0
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565... 28 7.9
02_05_0375 + 28387091-28387597 28 7.9
02_02_0454 + 10436491-10436820,10437487-10437570,10437667-104377... 28 7.9
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = +3
Query: 249 RPLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKE 428
R + EW + + + D+I TL L SK R + D + +L + E+ + L +
Sbjct: 223 RAAKKEWGSDRSMLVDQIGTLEVNLDSKTRMAEDFRSRLEMCSQALAHEEGRRKLLEAEM 282
Query: 429 SQVYQKTESVIKTTAEKTSSI 491
S++ +V+ E S+I
Sbjct: 283 SELKHLYGNVVSDYEEARSTI 303
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 33.5 bits (73), Expect = 0.16
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = +3
Query: 258 RAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNVKE 428
R +W RE AR++ EI R Q +DLKRK L W+ I E + L+ K+
Sbjct: 129 RKDW-RE-ARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRRNKK 186
Query: 429 SQVYQKTESVIKTTAEKTSSIIGGITAACPASSVRCA 539
+ ++ V T EK G +TA P S A
Sbjct: 187 RR-FESFVPVPDTLLEKARQEQGHVTALDPKSRAAAA 222
>02_05_0437 -
28986459-28986524,28986606-28986731,28986842-28986941,
28987583-28987660,28987857-28987937,28989488-28989624,
28989693-28989743,28989785-28989878,28990091-28990260
Length = 300
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 255 LRAEWSR-ELARVEDEIATLRTVLQSKIRQSSDLKRKLG-ITVWKEITEDVNQGLKNVKE 428
L AE R E+ ++++EI +++ + + D+++++G +T ITE+++ ++N
Sbjct: 198 LLAESKRQEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGELTRTSFITEEIDTNIENSAA 257
Query: 429 SQVYQKTESVIKTTAEKTSS 488
+ KTE + +K++S
Sbjct: 258 ATKEAKTELAKASKTQKSNS 277
>01_06_1155 - 34957402-34957824
Length = 140
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/85 (28%), Positives = 33/85 (38%)
Frame = +2
Query: 425 RKPSIPKN*ICDKNDRREDVFDHRRHHGGVSSKLGQMRNSESFRSIEERVGSAYENVKGK 604
R P P N + K R R G ++K+GQ R + + EER + G
Sbjct: 25 RPPPRPLNHVAGKPPNRCRFLRQIRRQGHSTTKVGQERRAAGWGDDEERWPWEETGLPGA 84
Query: 605 VASRSNSTQSFDEALRDASGATSPP 679
RS S + D A R + A P
Sbjct: 85 PPLRSVSVKLADHATRSSLAACLSP 109
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Frame = +3
Query: 273 RELARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNVKESQVYQ 443
R AR++ EI R Q +DLKRK L W+ I E + L+N K+ ++
Sbjct: 229 RREARLKQEIEKYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRNKKKR--FE 286
Query: 444 KTESVIKTTAEKTSSIIGGITAACPASSVRCATRS 548
V T EK +TA P S T +
Sbjct: 287 SFVPVPDTLLEKARQEQEHVTALDPKSRAAGGTET 321
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 501 ITAACPASSVRCATRSLSAPSKNASVRLMKT 593
I A+CP SS A + +APS+ AS + KT
Sbjct: 30 IAASCPFSSSSAAAAAPAAPSETASTSVTKT 60
>03_05_0415 -
24019330-24019539,24020948-24021099,24021765-24021846,
24021930-24022068,24022775-24023127
Length = 311
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 237 TRAGRPLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITE 395
T RP WSREL I T+ T ++ + S + + +WK TE
Sbjct: 63 TTTPRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAIWKSATE 115
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 535 HLTELAGHAAVMPPMIEDVFSAVVFITDSVFWYTWLSLTFFKP*LTSSVI-SFHTVMPSL 359
+ T L A +I + A VF SV++ W + ++F+P L SSV+ VM ++
Sbjct: 257 YATSLGAAATACGAVIGSMAVAQVF--SSVYFSAWSNRSYFRPLLFSSVVLLLGNVMYAM 314
Query: 358 RFKSEL*RILLCSTVL 311
F ILL VL
Sbjct: 315 AFDLGSLTILLLGRVL 330
>07_01_0509 +
3792255-3792661,3792745-3792851,3792949-3793043,
3793169-3793245,3793334-3793454,3793533-3793592,
3793672-3793812
Length = 335
Score = 28.3 bits (60), Expect = 6.0
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +3
Query: 318 VLQSKIR--QSSDLKRKLGITVWKEITEDVNQGL---KNVKESQVYQKTESVIKTTAEKT 482
V+ +++R Q + +RK+ + +E ED+ GL K+ K + +K ESV+ + E
Sbjct: 194 VISNRVREIQLQNYQRKMEQKMQRE--EDLRMGLRLYKDGKYEEALEKFESVLGSKPEIN 251
Query: 483 SSIIGGITAACPASSVRCATRSLSA 557
S I AC S + +SA
Sbjct: 252 ESSIASYNVACCYSKLDRIQAGISA 276
>10_08_0472 - 18154797-18155048,18155332-18156318,18156424-18156546,
18156654-18156808,18157611-18157824,18158977-18159077,
18159162-18159285,18159584-18159655,18159897-18159961,
18160167-18160233,18160917-18161015,18161099-18161167,
18161286-18161409,18162507-18162566,18163111-18163634
Length = 1011
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 279 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDV-NQGLKNVKESQVYQKTES 455
++R + I +R + ++ + S + L ++K+ E++ + G E +VY K +
Sbjct: 829 ISRGQIGIQQVRGLKEANFQLDSLIAEPLRENIYKKSVEEIFSSGTGEFDEEEVYVKIPA 888
Query: 456 VIKTTAEKTSSIIGGI 503
+ AEK SI+ I
Sbjct: 889 DLIINAEKAKSIVQDI 904
>02_05_0375 + 28387091-28387597
Length = 168
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Frame = +3
Query: 237 TRAGRPLRAEWSRE-----LARVEDEIATLRTV-LQSKIRQSSDL 353
T GR + A SR LA VE+ +ATLRT+ +KIR S DL
Sbjct: 27 TGGGRAVAARHSRSNLRVPLAVVEELLATLRTIGGPTKIRDSDDL 71
>02_02_0454 +
10436491-10436820,10437487-10437570,10437667-10437797,
10437873-10437948,10438366-10438436,10438559-10438645,
10438725-10438797,10438881-10438948,10439020-10439088,
10439160-10439265,10439831-10439887,10440297-10440389
Length = 414
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -3
Query: 667 GATGVTQRLVEALSRVRSRSYFTLDV 590
G GVT +EALS+ SRS TLDV
Sbjct: 333 GIVGVTDVCLEALSKHCSRSLTTLDV 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,259,285
Number of Sequences: 37544
Number of extensions: 337255
Number of successful extensions: 1195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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