Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00196
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)                   55   6e-08
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)                 30   1.5  
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   2.7  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        29   4.6  
SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)           28   6.1  
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  28   8.1  

>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
          Length = 829

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
 Frame = +3

Query: 279 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK---- 446
           L  +E+EI TL+  L  K  Q +DLKR+LGIT W +I E +      V++S+ Y K    
Sbjct: 73  LRHIEEEITTLKQALARKENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNKLSQG 132

Query: 447 ---TESVIKTTAEKTSSIIGGITAA 512
              T+ V+   +EKT S +   ++A
Sbjct: 133 ASATKVVLVDASEKTVSAVKTASSA 157


>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
          Length = 423

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +2

Query: 377 VERDHRGRQSGFEKRQRKPS-IPKN*ICDKNDRRE-DVFDHRRHHGGVSSKLGQMRNSES 550
           V++ +   +   EK Q +P  IP     ++ D++E +   HR HH  +  K  +    E 
Sbjct: 283 VQKTNEEDKEEIEKNQHRPHHIPIVEKTNEEDKKEIEKNQHRPHHIPIVEKTNEEDKEEF 342

Query: 551 FRSIEERVGSAYENVKGKV 607
           F+ +E+R+ +   ++  K+
Sbjct: 343 FQKLEQRLETEITSMDQKL 361


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
 Frame = +3

Query: 234  HTRAGRPLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGL 413
            H + G     + + E A +  +   L+T L+  +    DL+   G++ W      + Q +
Sbjct: 974  HIQPGVLRNLQRADEGAEMMLDAVALQTCLEGLVPSVQDLQDHDGVSRWCARVTCLRQTV 1033

Query: 414  KNVKESQVYQKTESVIKTTAEKTSSIIGGITAACP-ASSVRCATRSLSAPSKNA--SVRL 584
            + +   + + KT+       E+T +II    +    AS VR     +++P  +A  S  L
Sbjct: 1034 ETMTSKENFDKTDEKSGGYGERTQNIIKHCWSLWQRASIVRLFVEHVTSPDDHAVNSANL 1093

Query: 585  MKTSRVK*LLDRTRLRAS 638
             K  ++  L D T + A+
Sbjct: 1094 QKLWKI--LGDETDMMAN 1109


>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
 Frame = +2

Query: 380 ERDHRGRQSGFEKRQRKPSIPKN*ICDKNDRREDVFD------------HRRHHGGVSSK 523
           ERD + RQ G ++ +  P+  K  +  ++ R +  FD            +  H   V  +
Sbjct: 6   ERDGKIRQKGQKRNKECPTCRKKLVSKRSLRPDPNFDALIAKIYPDREEYEAHQEKVLQR 65

Query: 524 LGQMRNSESFRS-IEERVGSAYENVKGKVASRSNSTQSFDEALRDASGATSP 676
           L +  N ++  S IEE +     N   +V  RS+  Q        A G+T+P
Sbjct: 66  LSKHHNQQALTSSIEEGLKLQAMNRAQRVRKRSSEEQGHAPIAATAEGSTTP 117


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/69 (26%), Positives = 37/69 (53%)
 Frame = +3

Query: 276  ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTES 455
            E+ ++++ +  L+   Q+K R+     + L  T   E +ED+   L++  +S+V QKT+ 
Sbjct: 2831 EIQQMKEHVIALQE--QAKRREKELHAQLLAKTRQLEQSEDITDSLRDAIDSEVAQKTDL 2888

Query: 456  VIKTTAEKT 482
                 +E+T
Sbjct: 2889 TNTLNSERT 2897


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = +3

Query: 288 VEDEIATLRTVLQSKIRQSSDLKRKL--------GITVWKEITEDVNQGLKNVKESQ 434
           +E+EI   +  L+   R+++DLK KL        G  V K++T  V +  +N+K  Q
Sbjct: 138 LEEEITAKKAALKQISRENTDLKSKLELLMKDQSGAAVIKDLTRQVEELRENLKAKQ 194


>SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +3

Query: 273 RELARVEDEIATLRTVLQSKIRQSSDLKRKL-GITVWKEITEDVNQGLKNVKESQVYQKT 449
           +E    +DEI TLR +L  + R++S  + KL G        +++ + LK  +E+  YQ+ 
Sbjct: 534 KERNAFDDEIETLRQMLADRTRRNSQTEDKLSGTEACISQLKELQECLK--EENVFYQEK 591

Query: 450 ESVIKTTAEKTSSIIGGITAAC 515
              ++   E++ + +  +   C
Sbjct: 592 IRELEKELEESQAEVDDLQCRC 613


>SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)
          Length = 431

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 371 HGVERDHRGRQSGFEKRQRKPSIPKN*ICDKND 469
           HG     RG Q+  +KR   P +PK+ +  K D
Sbjct: 369 HGENMIRRGSQASTQKRNMTPIVPKHVMAPKRD 401


>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 458 DKNDRREDVFDHRRHHGGVSSKLGQMR--NSESFRSIEERVGSAYENVKGKVASRSNSTQ 631
           +KN+ ++          G SS+L Q R  N ++   +E       E +KG + S+S+  +
Sbjct: 220 EKNEDKDMDVTFDESEAGSSSQLDQPRRGNEDTLGKVEVIDSGNDEAMKGSLVSQSDQPR 279

Query: 632 SFDEALRD 655
             DEA +D
Sbjct: 280 LEDEAKQD 287


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 414 KNVKESQVYQKT--ESVIKTTAEKTSSIIGGITAACPASSVRCATRSLSAPSKNASVRLM 587
           K VK+  +  KT  E V +TT+    S+ GG +++  +      ++S S+P  + S  L 
Sbjct: 458 KLVKKGSLKSKTGKEQVKRTTSGSHPSLAGGASSSKQSQKSSVTSKSSSSPKSSPSSSLQ 517

Query: 588 KTSRV 602
           +   +
Sbjct: 518 RLPNI 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,590,233
Number of Sequences: 59808
Number of extensions: 379325
Number of successful extensions: 3782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3781
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)