Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00196
         (684 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    25   2.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   9.0  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 371 HGVERDHRGRQSGFEKRQRKP 433
           HGV R    R+ G + R+RKP
Sbjct: 208 HGVNRPLAMRKDGIQTRKRKP 228


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 321 VQFSKSRFHL--RHGLARDSIQRVMVCLLGCEAGQLIR 214
           V+F+K    L  ++G  + +I   M   LGC AGQ  R
Sbjct: 103 VEFNKRANLLVGKNGSGKSAILAAMTIGLGCNAGQTNR 140



 Score = 23.0 bits (47), Expect = 9.0
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +3

Query: 276 ELARVEDEIATLRTVLQS---KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK 446
           +LA V+DE+  LRT ++    +IR    L  K   T+     +  ++  + V   + Y  
Sbjct: 327 QLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEAYGT 386

Query: 447 TESVIKTTAEKTSSIIGGITAA 512
               ++    K ++I  G+  A
Sbjct: 387 VRRTLQDVQAKQAAIERGMRNA 408


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,526
Number of Sequences: 2352
Number of extensions: 12334
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)