Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00196
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.51 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.89 
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    23   2.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 261 AEWSRELARVEDEIATLRTVL 323
           +E  R+L R+ED++ATLR  L
Sbjct: 559 SEKFRKLIRIEDDVATLRMKL 579


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 261 AEWSRELARVEDEIATLRTVL 323
           +E  R+L R+ED +ATLR  L
Sbjct: 612 SEKFRKLIRIEDNVATLRMKL 632


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 351 LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGG 500
           + RK+G +V   +    N GL  +K +  ++ TE   K   E     + G
Sbjct: 29  MTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEIKFKLGEEFEEETVDG 78


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 664 ATGVTQRLVEALSRVRSRSYFTLDVFI 584
           ATG+ QRL  +    R+  YF    ++
Sbjct: 224 ATGIYQRLSLSFKLQRNIGYFVFQTYL 250


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 664 ATGVTQRLVEALSRVRSRSYFTLDVFI 584
           +TG   RL   +  VRS  Y+ + ++I
Sbjct: 203 STGNYSRLACEIQFVRSMGYYLIQIYI 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,375
Number of Sequences: 438
Number of extensions: 3080
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)