Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00196
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 35 0.058
At2g38720.1 68415.m04755 microtubule associated protein (MAP65/A... 34 0.10
At1g37020.1 68414.m04616 Ulp1 protease family protein 33 0.13
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m... 33 0.13
At5g12200.1 68418.m01431 dihydropyrimidinase / DHPase / dihydrop... 32 0.31
At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domai... 30 1.6
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ... 30 1.6
At1g05900.2 68414.m00619 endonuclease-related similar to endonuc... 30 1.6
At1g05900.1 68414.m00618 endonuclease-related similar to endonuc... 30 1.6
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb... 29 2.9
At1g02330.1 68414.m00178 expressed protein contains similarity t... 29 2.9
At4g10270.1 68417.m01688 wound-responsive family protein similar... 29 3.8
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati... 28 5.0
At4g30830.1 68417.m04373 expressed protein weak similarity to M ... 28 6.6
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 28 6.6
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 27 8.8
At5g38710.1 68418.m04682 proline oxidase, putative / osmotic str... 27 8.8
At3g17520.1 68416.m02238 late embryogenesis abundant domain-cont... 27 8.8
At2g46180.1 68415.m05742 intracellular protein transport protein... 27 8.8
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 27 8.8
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 258 RAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL 365
+ EW E +++ DEI +L+T L S R S DL++KL
Sbjct: 211 KKEWEEEKSKLLDEIYSLQTKLDSVTRISEDLQKKL 246
>At2g38720.1 68415.m04755 microtubule associated protein
(MAP65/ASE1) family protein low similarity to myosin
[Schistosoma japonicum] GI:3941320; contains Pfam
profile PF03999: Microtubule associated protein
(MAP65/ASE1 family)
Length = 587
Score = 33.9 bits (74), Expect = 0.10
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +3
Query: 249 RPLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKN--V 422
R RAE R LA+ E EIA+L + L K+ S K+K G KE V L++ +
Sbjct: 53 RKFRAELQRSLAQAEAEIASLMSALGEKV---SFAKKKEGSL--KEQISSVKPVLEDLLM 107
Query: 423 KESQVYQKTESVIKTTAEKTSSIIGGITAACPASSV 530
K+ + ++ + AE TS+I G S V
Sbjct: 108 KKDRRRKELSETLNQIAEITSNIAGNDYTVSSGSEV 143
>At1g37020.1 68414.m04616 Ulp1 protease family protein
Length = 611
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +3
Query: 291 EDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTT 470
EDE LQ KI+ ++ K+K + K+ ++ + + VKE +V T V+K T
Sbjct: 253 EDETPNKELELQLKIKDATKGKKKKVAIMPKKASKIPKKKMAKVKEMKV--STPKVLKKT 310
Query: 471 AEKTSSIIGGITAACPASSVRCA 539
+ +G +T A +++ A
Sbjct: 311 MRRDDDYVGDVTEKVVADTLKMA 333
>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
myosin heavy chain (GI:1408194) {Placopecten
magellanicus}; similar to Myosin heavy chain, clone 203
(Fragment) (SP:P39922){Hydra attenuata}; contains one
transmembrane domain
Length = 323
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +3
Query: 225 GRPHTRAGRPLRAEWSRE---LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITE 395
G T LR+E S++ + +E E+A LRTV + ++ +L+ KLG KE+ E
Sbjct: 125 GEEATAEAEKLRSEISQKGGGIEELEKEVAGLRTVKEENEKRMKELESKLGALEVKELDE 184
Query: 396 DVNQGLKNVKESQVYQKTESVIKTTAEKTSSI 491
+ + + E + EK S+
Sbjct: 185 KNKKFRAEEEMREKIDNKEKEVHDLKEKIKSL 216
>At5g12200.1 68418.m01431 dihydropyrimidinase / DHPase /
dihydropyrimidine amidohydrolase / hydantoinase (PYD2)
identical to dihydropyrimidine amidohydrolase (PYD2)
[Arabidopsis thaliana] GI:28194047; similar to SP|Q9EQF5
Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase)
(DHP) {Mus musculus}; contains Pfam profile PF01979:
Amidohydrolase family
Length = 531
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -3
Query: 643 LVEALSRVRSRSYFTLDVFISRTDAFFDGAERLRVAHLTELAGHAAVMPPMIE 485
L+E L R +S + V DA F+G +R+ +T GHA PP++E
Sbjct: 209 LLEGLKRCKSLGALAM-VHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLE 260
>At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 682
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 539 NSESFRSIEERVGSAYENVKGKVASRSNSTQSFDEALRDASGATSPPI 682
N +F IEE +G EN+ K++S++ + S + R AT +
Sbjct: 215 NEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDV 262
>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 657
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 288 VEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV 422
V D +A LRT L+S+ + +LK+K ++W I E+V + L +V
Sbjct: 308 VGDTLAILRTELKSQKKHVRNLKKK---SLWSRILEEVMEKLVDV 349
>At1g05900.2 68414.m00619 endonuclease-related similar to
endonuclease III [Homo sapiens] GI:1753174; contains
Pfam profile PF00633: Helix-hairpin-helix motif
Length = 386
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/105 (25%), Positives = 49/105 (46%)
Frame = +3
Query: 255 LRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQ 434
LR++ + E A E T ++ + +I+Q DL+ + + GL ++++S
Sbjct: 43 LRSDSNSEAAHGASESETRVSLRKKRIKQD-DLEPVKKCSARETKARKDMCGLPDIEDSP 101
Query: 435 VYQKTESVIKTTAEKTSSIIGGITAACPASSVRCATRSLSAPSKN 569
Y+KT + K +S I A+ ASS++ T L P +N
Sbjct: 102 -YKKTNGTASSRTRKLNSYIKSTEASPSASSIK--TAGLGIPPEN 143
>At1g05900.1 68414.m00618 endonuclease-related similar to
endonuclease III [Homo sapiens] GI:1753174; contains
Pfam profile PF00633: Helix-hairpin-helix motif
Length = 314
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/105 (25%), Positives = 49/105 (46%)
Frame = +3
Query: 255 LRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQ 434
LR++ + E A E T ++ + +I+Q DL+ + + GL ++++S
Sbjct: 43 LRSDSNSEAAHGASESETRVSLRKKRIKQD-DLEPVKKCSARETKARKDMCGLPDIEDSP 101
Query: 435 VYQKTESVIKTTAEKTSSIIGGITAACPASSVRCATRSLSAPSKN 569
Y+KT + K +S I A+ ASS++ T L P +N
Sbjct: 102 -YKKTNGTASSRTRKLNSYIKSTEASPSASSIK--TAGLGIPPEN 143
>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
(RbohE) / NADPH oxidase nearly identical to respiratory
burst oxidase protein E GI:3242787 [gi:3242787] from
[Arabidopsis thaliana]
Length = 926
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 110 HSFHTVRVFHCKI*AVFKQLKKQCQ 184
H TV VF+C I V K+LKKQ Q
Sbjct: 885 HPNSTVGVFYCGIQTVAKELKKQAQ 909
>At1g02330.1 68414.m00178 expressed protein contains similarity to
hepatocellular carcinoma-associated antigen 59
GI:7158847 from [Homo sapiens]
Length = 279
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 264 EWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQ 443
E EL RVEDE+ + L+ K ++SS+ T E+ + LKN++E++ +
Sbjct: 122 EVENELKRVEDELYKIPDHLKVK-KRSSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAK 180
Query: 444 K 446
K
Sbjct: 181 K 181
>At4g10270.1 68417.m01688 wound-responsive family protein similar to
wound induced protein (GI:19320) [Lycopersicon
esculentum]
Length = 90
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +3
Query: 351 LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSS 488
LK +LG+ W I VNQ L+N S K S +A TSS
Sbjct: 20 LKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSS 65
>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
similar to UDP-glucose glucosyltransferase GI:3928543
from [Arabidopsis thaliana]
Length = 489
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = +3
Query: 330 KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGI 503
+I ++S++ RKLG+ +W+E TE ++ +++ +Y S+ T+E+ G+
Sbjct: 265 EIDKNSEI-RKLGLNLWEEETESLDWLDTKAEKAVIYVNFGSLTVLTSEQILEFAWGL 321
>At4g30830.1 68417.m04373 expressed protein weak similarity to M
protein type 1 [Streptococcus pyogenes] GI:311758;
contains Pfam profile PF04576: Protein of unknown
function, DUF593
Length = 363
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +3
Query: 240 RAGRPLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVN 404
R+G+ RAE+ EL R+ + L + ++S + ++ I++ KE+ E+++
Sbjct: 272 RSGKRNRAEYQAELQRLRQRVERLERGKSNTEPETSGVIKQEEISLLKEVKEELS 326
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 342 SSDLKRKLGI--TVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAAC 515
+S L R +G T WKE+ +D++ G + + S K ES+ K + + IT+ C
Sbjct: 231 ASGLLRAIGFLQTNWKELADDISTGTLSSRISDPAIK-ESMSKILTKPDQELADFITSVC 289
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 552 SAPSKNASVRLMKTSRVK*LLDRTRLRASTRRCVTPVAP-PRP 677
SAPSK+A R +R+K +R L + + PVAP P+P
Sbjct: 311 SAPSKDAKARKRAKARIKRAQERIALGVKKLK-LKPVAPKPKP 352
>At5g38710.1 68418.m04682 proline oxidase, putative / osmotic
stress-responsive proline dehydrogenase, putative
similar to proline oxidase, mitochondrial precursor
(Osmotic stress- induced proline dehydrogenase)
[Arabidopsis thaliana] SWISS-PROT:P92983
Length = 476
Score = 27.5 bits (58), Expect = 8.8
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +3
Query: 291 EDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTT 470
ED A R V S + +S+ LK L V E ED +N+ Q + +T KT
Sbjct: 112 EDAAAAARRV--SSVYESTGLKGMLVYGV--EHAEDGGACDENI---QKFIETVEAAKTL 164
Query: 471 -AEKTSSIIGGITAACPASSVRCATRSLSAPSKNASVRL 584
+ SS++ ITA CP + ++ + L KN + +L
Sbjct: 165 PSSHLSSVVVKITAICPMNVLKRVSDLLRWQYKNPNFKL 203
>At3g17520.1 68416.m02238 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to PIR|S04045|S04045 embryonic
abundant protein D-29 [Gossypium hirsutum]; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 298
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +2
Query: 515 SSKLGQMRNSESFRSIEERVGSAYENVKGKV-----ASRSNSTQSFDEA 646
+ + + + E+ + +E+ GSAYE K KV + + ++QS+D A
Sbjct: 79 AKEAAKRKAEEAVGAAKEKAGSAYETAKSKVEEGLASVKDKASQSYDSA 127
>At2g46180.1 68415.m05742 intracellular protein transport protein
USO1-related similar to Intracellular protein transport
protein USO1 (Swiss-Prot:P25386) [Saccharomyces
cerevisiae]
Length = 725
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 255 LRAEWSRELARVEDEIATLRTVLQSKI 335
+ AEW +++VED+ A +R VL+ +
Sbjct: 531 IAAEWKNRVSKVEDDNAKVRRVLEQSM 557
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 381 KEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAACPASSVRCAT 542
KE+ D+N L ++ V +++ V +T SS AA A++ AT
Sbjct: 652 KELLTDLNSPLLQKRQEVVTKQSNPVPPSTPSSASSAAAAAAAAAAAAAAAAAT 705
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,732,075
Number of Sequences: 28952
Number of extensions: 265589
Number of successful extensions: 896
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -