Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00195
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    28   1.2  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   4.7  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   8.1  

>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 153 GPRSGAGTRMRKRIALTTK 209
           GPRSG G+R RKR  ++ K
Sbjct: 241 GPRSGVGSRKRKRATVSRK 259


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 425 SDSQSTM*EKRVLNNIVPFCSISK 496
           SD+ +TM  K + NN  PF  ISK
Sbjct: 376 SDATTTMDTKSLFNNTSPFTPISK 399


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 490 FEVFFCLINDLTVFPRNFPHFNN*LSLKS 576
           F  F+  + D+++ P N PH+ + ++ KS
Sbjct: 187 FPHFYTKLPDVSLVPNNMPHYPDEVTAKS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,726
Number of Sequences: 5004
Number of extensions: 40772
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)