Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00195
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1188 - 9446764-9446943,9447030-9447232,9447307-9447438,944...    30   1.2  
06_03_1273 + 28892774-28893946,28894964-28895104,28895277-288953...    28   4.8  
01_06_1625 + 38729803-38731115,38731202-38731391,38731472-387315...    28   4.8  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    28   4.8  
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    28   6.3  
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    27   8.3  

>01_01_1188 -
           9446764-9446943,9447030-9447232,9447307-9447438,
           9447570-9447657,9447723-9447950,9449542-9449763
          Length = 350

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 59  FSDVRADYNRKRSQAKLKVDVLVSRQVRLIVRPAIRRR 172
           + +VR D+   +S  KLK ++ + R V  +  PA+ +R
Sbjct: 85  YEEVRCDFKATQSTLKLKAELRILRDVAEVYTPAVYKR 122


>06_03_1273 +
           28892774-28893946,28894964-28895104,28895277-28895329,
           28895852-28895966
          Length = 493

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 91  KVPSEVES*CFSQSP-SSINRAARDQAPAPGCENA 192
           + P+ ++S C S +P SS+ R  RD AP+PG  +A
Sbjct: 138 RCPAPIKS-CSSPAPVSSVFREFRDAAPSPGTPDA 171


>01_06_1625 +
           38729803-38731115,38731202-38731391,38731472-38731504,
           38731582-38732199,38732304-38733011
          Length = 953

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 144 NRTWRLTKTSTFNFAWDLFRL*SARTSEKGLKCRRERAAVCQA 16
           N   R +K   +NF  + F L +   S +  +C   R+ VC+A
Sbjct: 640 NMGLRASKEKKYNFGAEFFELAAEFFSSRNAECDENRSKVCKA 682


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 506 QKKTSKSNKMARYYSEHAFLTSWTDYRNDASLAHTKKKLEHKTRNYTVDTQ 354
           +KK    +    Y SE ++  S   +R++ S AHT    +HK + ++ D +
Sbjct: 718 RKKHHPESDEENYDSEESYKHSRKKHRSEDSRAHTSDVHKHKLKRHSKDLE 768


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -1

Query: 443 SWTDYRNDAS-LAHTKKKLEHK 381
           SWTDY+ND+S L + K KL+ K
Sbjct: 432 SWTDYKNDSSQLDNLKGKLKGK 453


>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 224 SLNYFIRDSLVGQEPSRSDSGAGLTYLVL 310
           +L   +RD LV Q  ++ DS AG+T+  +
Sbjct: 286 ALTDLLRDDLVSQPKNKCDSDAGITFTTI 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,061,094
Number of Sequences: 37544
Number of extensions: 274199
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)